•     By Jason Derry —Harvard_crest

    Can the open source problem-solving model used in the
    software community work in the world of science?  The Harvard Business School has published a
    very interesting interview on this topic (see "Open Source Science: A New Model for Innovation").  In the interview, Karim R. Lakhani, assistant
    professor at the Harvard Business School, discusses his research relating to
    whether or not collaborative problem-solving methods should/could be used in
    the scientific community.  He mentions
    some of the obvious reasons why scientists and companies generally shy away
    from asking for outside help with their research, including fear of losing
    intellectual property rights, fear of divulging scientific or business
    strategies to potential competitors, and the reluctance to share secrets with
    others.

    However, Lakhani provides solid arguments for why
    presenting problems to the scientific community can lead to innovative
    solutions and progress.  For example,
    Lakhani emphasizes that very often a solution to a problem lies in a separate
    or intersecting scientific area than the problem itself, and once a person
    skilled in a different area of science views a problem, a solution becomes
    clear.  As a specific example to support
    this observation, Lakhani mentions an instance where a pharmaceutical company
    was having trouble analyzing unusual toxicology results, until a protein
    crystallographer viewed the problem offered a solution.  The company, therefore, benefited from someone
    viewing the problem as a crystallography problem rather than as a toxicology
    problem.

    Innocentive
    The biotech community may reap huge benefits from using
    an open source method of solving problems.  The main concern, of course, is the need to structure licensing
    agreements or other types of collaborative agreements such that proprietary
    information is not given away or lost in the process.  If a company does not want to develop such
    agreements or open source methods on its own, the company InnoCentive has created
    an environment for open source scientific collaboration using a reward based
    system.  More information about
    InnoCentive and its collaborative problem-solving model can be found here.

    Jason Derry, Ph.D., who graduated with honors from DePaul University College of Law, is a molecular biologist and founding author of Patent Docs.

  •     By Jason Derry  —Usachinaflag

    The Sino-American Biotechnology and Pharmaceutical
    Professionals Association (SABPA) is a non-profit organization dedicated to
    fostering licensing and other partnering relationships among biotechnology and
    pharmaceutical companies and academia in the United States and China.  The SABPA hosts numerous networking events,
    such as dinners and conferences, to facilitate communication between investors,
    scientists, and companies from the U.S. and China.  Recently, the SABPA hosted the second annual
    Pacific Forum on Life Science Alliances in San Diego.  The SABPA has a number of sponsors, including
    Merck, Novartis, and Pfizer.  Detailed
    information about the SABPA can be found here.

    Jason Derry, Ph.D., who graduated with honors from DePaul University College of Law, is a molecular biologist and founding author of Patent Docs.

  •     By Sherri Oslick

    Gavel
    About Court Report: Each week we will report briefly
    on recently filed biotech and pharma patent cases. A few interesting cases will be selected for
    periodic monitoring, providing our readers with an opportunity to follow the
    progress of these cases.


    Dusa Pharmaceuticals, Inc. et. al. v. Fronteir Scientific, Inc.

    1:06-cv-00141; filed November 13, 2006 in the District
    Court of Utah

    Infringement of U.S. Patent Nos. 6,710,066
    ("Photochemotherapeutic Method Using 5-aminolevulinic acid and Other
    Precursors of Endogenous Porphyrins," issued March 23, 2004) and 5,955,490
    (same title, issued September 21, 1999) based on Fronteir's sale of
    aminolevulinic acid, the active incredient is Dusa's Levulan® (used to treat
    actinic keratosis).  View the complaint here.


    Aventis Pharmaceuticals, Inc. v. Teva Pharmaceuticals USA
    Inc. et. al.

    2:06-cv-00469; filed November 14, 2006 in the Eastern
    District of Texas

    Infringement of U.S. Patent No. 7,135,571 ("Processes
    for Preparing Anhydrous and Hydrate Forms of Antihistaminic Piperidine
    Derivatives, Polymorphs and Pseudomorphs Thereof," issued November 14,
    2006) based on Barr and Teva's joint manufacture and sale of Teva's generic
    Allegra® (fexofenadine hydrochloride, used to treat allergies).  View the complaint here.


    Cornerstone
    Biopharma, Inc., et. al. v. Preston et al.

    4:06-cv-00251; filed November 14, 2006 in the Eastern
    District of North Carolina

    Infringement of U.S. Patent No. 6,270,796
    ("Antihistamine/decongestant Regimens for Treating Rhinitis," issued
    August 7, 2001) based on defendants' sale of AllePak, allegedly a
    "generic" version of Cornerstone's AlleRx® formulations (used to
    treat allergies and symptoms of the common cold).  View the complaint here.


    Cornerstone Biopharma, Inc. et. al. v. Sovereign
    Pharmaceuticals, Ltd.

    1:06-cv-01006; filed November 16, 2006 in the Middle
    District of North Carolina

    Infringement of U.S. Patent No. 6,270,796
    ("Antihistamine/decongestant Regimens for Treating Rhinitis," issued
    August 7, 2001) based on defendants' manufacture of AllePak for Everton
    Pharmaceuticals, LLC (a named defendant in 4:06-cv-00251).  View the complaint here.


    Alcon Manufacturing Ltd. et. al. v. Apotex Inc. et. al.

    1:06-cv-01642; filed November 15, 2006 in the Southern
    District of Indiana

    Infringement of U.S. Patent No. 5,641,805 ("Topical
    Ophthalmic Formulations for Treating Allergic Eye Diseases," issued June
    24, 1997) following a paragraph IV certification as part of Apotex's filing of
    an ANDA to manufacture a generic version of Alcon's Patanol® (an ophthalmic
    solution containing olopatadine hydrochloride, used to treat allergic
    conjunctivitis).  View the complaint here.

  • Biotechnology Industry Organization (BIO) The Biotechnology Industry Organization (BIO)
    is hosting the fourth BIO-Asia Partnering
    Conference in Tokyo on January 29
    and 30, 2007.  According to BIO’s
    press release, the conference allows biotech and pharmaceutical companies from Asia,
    Europe, Australia,
    and the United States
    to meet together for the purpose of exploring potential partnering
    opportunities.  The past year’s event
    included over 400 participants.  Details
    about the event can be found here.

  •     By Jason Derry —Logo_5

    NeuroMedix Inc., a biotechnology company seeking therapeutic
    approaches for treating neuronal
    diseases, has announced the intent to pursue
    partners or acquisition possibilities.  The company currently has a potential product, Minozac, in pre-clinical
    studies, and is preparing to submit the Phase I safety application for continuing
    clinical trial progression.  Minozac is
    NeuroMedix’s lead product for the treatment of Alzheimer’s disease and other
    diseases of the central nervous system.  NeuroMedix has indicated that the intent to explore merger and
    acquisition possibilities does not guarantee that such a relationship will be
    formed.  A Fact Sheet discussing company
    goals and providing additional information about Minozac in particular can be found here.

    Jason Derry, Ph.D., who graduated with honors from DePaul University College of Law, is a molecular biologist and founding author of Patent Docs.

  •     By Christopher P. Singer

    EFS-Web
    With the release of EFS-Web 1.1 on October 14, 2006, the USPTO has
    streamlined the filing of sequence listings for practitioners and
    patentees.  The prior version of EFS-Web
    was limited because it allowed submission of files in .pdf format only and was
    not enabled to handle sequence listings, which are typically written as text
    files (.txt).  The latest version of
    EFS-Web overcomes this limitation and allows practitioners to submit
    electronically files such as sequence listings, computer program listings, and
    mega tables.  This eliminates the need to
    submit these types of files on supplemental electronic media (e.g., CD-R, 3.5"
    disk, etc.), which avoided fees relating to application size (currently $250 for large entities and $125 for small entities per 50 pages after the first 100).

    USPTO Seal
    According to sources at the USPTO Electronic Business Center, the requirements of Title
    37 of the Code of Federal Regulations (37 C.F.R. §§ 1.52(e) and 1.821-1.825) have
    been relaxed for sequence listings that are filed using EFS-Web 1.1.  Specifically, filers need only submit a
    single .txt file containing the sequence listing and an amendment that
    incorporates the sequence listing into the specification.  Practitioners no longer need to include the
    compliance statement under 37 C.F.R. § 1.821(f) or the paper copy of the
    sequence listing (or the duplicate copies of the sequence listing on CD-R in
    lieu of a paper copy) when filing sequence listings using EFS-Web.  However, the USPTO recommends that filers
    include a statement that the content of the sequence listing does not extend
    beyond the original disclosure (i.e., does not contain new matter), either as a
    separate document, or as a part of the "Applicant arguments/remarks made
    in an Amendment" section of a response.

    For the time being, the USPTO will also accept sequence
    listings filed through EFS-Web 1.1 in a .pdf format; however the practice is
    strongly discouraged, since the USPTO must convert such .pdf files to .txt
    files to accommodate the sequence listing in its database.  As a result, filing sequence listings in .pdf
    format creates the possibility that conversion could introduce errors in the
    sequence that could compromise its capacity to be accurately processed and
    searched, and could even affect sufficiency of disclosure under 35 U.S.C. § 112.

  • ESTs Unpatentable for Failure to Satisfy 35 U.S.C. § 101
    Where Function of Underlying Gene Is Unknown

        By Sherri Oslick

    In an opinion of great import to biotechnology patent
    law, the Federal Circuit affirmed the decision of the Board of Patent Appeals that denied
    a patent to five expressed sequence tags (ESTs) — holding that in the absence
    of an identification of the function of the underlying genes, "the claimed
    ESTs have not been researched and understood to the point of providing an
    immediate, well-defined, real world benefit to the public meriting the grant of
    a patent."  In its opinion, the
    CAFC endorsed the 2001 PTO Utility Examination Guidelines, holding that Brenner
    v. Manson
    applies broadly to the fields of chemistry and biology and that the
    PTO had not applied a heightened standard for utility of ESTs.

    Monsanto, the real party in interest, had asserted that
    the claimed nucleic acid sequences found their use as research tools, including
    use in monitoring gene expression by measuring the level of mRNA through
    microarray technology and in identifying the presence or absence of
    polymorphism.  The CAFC, however,
    dismissed this argument and affirmed that, without presenting a specific
    function for the underlying gene, the claimed invention lacked a specific and
    substantial utility and the application in question therefore also did not meet
    the enablement requirement of 35 U.S.C. § 112, as it incorporates the utility
    requirement of 35 U.S.C. § 101.

    Following the directive from the Supreme Court in
    Brenner, the CAFC noted that any invention must have a substantial and specific
    utility.

    Substantial Utility: "an asserted use must show that
    the claimed invention has a significant and presently available benefit to the
    public."

    Specific Utility: "an application must disclose a
    use which is not so vague to be meaningless" and "an asserted use
    must [] show that the claimed invention can be used to provide a well-defined and particular benefit to the public."

    Applying these principles, the CAFC found that the
    asserted utilities met neither the substantial nor the specific test.  Rejecting Monsanto’s analogy that ESTs are
    like a microscope, a patentable research tool used to generate data about a
    sample of unknown properties, the CAFC found the ESTs to be merely a starting
    point for further research, providing no presently available benefit:

    [W]hile a microscope can offer an immediate, real world benefit
    in a variety of applications, the same cannot be said for the claimed ESTs.  Fisher’s proposed analogy is thus inapt.  Hence, we conclude that Fisher’s
    asserted uses are insufficient to meet the standard for a
    "substantial" utility under § 101.

    The CAFC also held that the asserted uses were not
    specific.  Asserting that any EST from
    the maize genome could perform any of the recited utilities, the CAFC found
    that Monsanto had failed to assert any utilities setting the five claimed ESTs
    apart from the 32,000 plus ESTs disclosed in the application or any EST for
    that matter.  The disclosure of such
    general utilities was "nebulous" and not sufficiently specific.

    In dissent, Judge Rader distinguished Brenner and argued
    that the majority, without supporting scientific evidence, was too quick to
    render a value judgment that the utility of the claimed ESTs would not provide
    enough valuable information, that the information gained through the ESTs was
    too "insubstantial" to merit patent protection.  Scientific research, noted Rader, is an
    incremental process, and ESTs, like a microscope, possess utility, albeit
    limited to the laboratory setting, as research tools useful in studying other
    compounds.  ESTs, therefore, provide an
    identifiable benefit to society.  Rader argued that the majority failed to
    recognize the complex nature of scientific discovery, and that "only the
    final step of a lengthy incremental research inquiry gets protection"
    under the majority holding.  The decision
    to deny protection to inventions that contribute to the "useful arts"
    but not to an extent justifying the exclusive right afforded by a patent,
    contended Rader, is more properly founded in the nonobviousness requirement of
    35 U.S.C. § 103 than in the utility requirement of 35 U.S.C. § 101.

    In re Fisher (Fed. Cir. 2005)
    Panel: Chief Judge Michel and Circuit Judges Rader and Bryson
    Opinion by Chief Judge Michel; dissenting opinion by Circuit Judge Rader

    For additional information regarding this case, please see:

    • "In re Fisher: EST Utility Redux,"  October 27, 2006

    This article was originally published on Patently-O on September 8, 2005.

  •     By Donald Zuhn and Paul Berghoff

    Few substantive areas of patent law have engendered the
    warmth of debate that routinely characterizes the written description
    requirement.  The controversy begins with
    the arguably ambiguous language of Section 112 (does a separate written
    description requirement even exist?) and is only exacerbated by the factually
    intensive nature of the legal inquiry.  Jurists who seek uniformity of law and predictability of application
    should steer well clear of the written description requirement.  Those who must confront it should do so with
    flexibility and good humor.

    Section 112 of the Patent Act describes what must be
    contained in a patent specification.  The
    first paragraph of this section provides that:

    [t]he specification shall contain a written description
    of the invention, and of the manner and process of making and using it, in such
    full, clear, concise, and exact terms as to enable any person skilled in the
    art to which it pertains, or with which it is most nearly connected, to make
    and use the same, and shall set forth the best mode contemplated by the
    inventor of carrying out his invention.(1)

    This statutory language has been construed as mandating
    satisfaction of three separate and independent requirements referred to as the
    "written description requirement," the "enablement
    requirement," and the "best mode requirement."(2)  An inventor, therefore, must both describe
    the claimed invention adequately and enable its reproduction and use,(3) as well
    as set forth the best mode of carrying it out.

    The words "written description" first appeared
    in the Patent Act of 1793.  Because
    including claims in a patent did not become a statutory requirement until 1870,
    the written description served "to distinguish [the invention] from all
    other things before known or used."(4)  In 1822, the Supreme Court determined that the written description of a
    patent served to enable an invention as well as to provide the public with
    notice of that invention – the latter function being eventually assigned to the
    claims.(5)  It was not until 1967, however,
    that the Court of Customs and Patent Appeals (CCPA) interpreted the first
    paragraph of section 112 as containing separate written description and
    enablement requirements.(6)  As first set
    forth by the CCPA, the written description requirement merely served to prevent
    new matter from being introduced into claims by amendment, and therefore, was
    no more than "a priority policeman."(7)  Since 1967, however, the purpose and meaning of the written description
    requirement has evolved dramatically as the Court of Appeals for the Federal
    Circuit and its predecessor courts have rendered decisions in cases where
    compliance with this requirement has been at issue.  The body of recent case law addressing the
    written description requirement has been described as one "that is of significant
    importance to the biotech industry [that] affects how patent applications are
    drafted, prosecuted and will be enforced in this and other areas of emerging
    technology."(8)

    The written description requirement has been interpreted
    more broadly than merely requiring that an inventor explain in writing how to
    make and use an invention.  Rather, the
    requirement demands that the inventor "also convey with reasonable clarity
    to those skilled in the art that, as of the filing date sought, he or she was
    in possession of the invention."(9)  An inventor must describe an invention with such clarity that one of
    ordinary skill in the art is convinced that, at the time the application was
    filed, the inventor actually possessed that which is deemed worthy of patent
    protection.(10)  In other words, the written
    description requirement is satisfied when a patent specification describes an
    invention in sufficient detail such that one skilled in the art can clearly
    conclude that "the inventor invented the claimed invention."(11)  Viewed this way, the written description
    requirement is more than just "a priority policeman;" it serves the
    important purpose of preventing an applicant from asserting that he invented
    that which he did not.(12)

    Although the Federal Circuit has warned that each case
    involving the issue of written description "must be decided on its own
    facts" and, therefore, that "the precedential value of cases in this
    area is extremely limited,"(13) three of the Court’s decisions have greatly
    informed this area of U.S. patent law, and more particularly the issue of
    written description in applications directed to biotechnological inventions:
    Fiers v. Revel(14); Regents of the University of California v. Eli Lilly &
    Co.
    (15); and Enzo Biochem, Inc. v. Gen-Probe Inc.(16)  The written description requirement in the
    context of biotechnological inventions has been addressed more recently in
    Amgen Inc. v. Hoechst Marion Roussel, Inc.(17); Noelle v. Lederman(18); and
    University of Rochester v. G.D. Searle & Co.(19)

    Fiers involved an appeal from a decision of the Patent
    and Trademark Office Board of Patent Appeals and Interferences in a three-way
    interference proceeding over claims to DNA encoding human fibroblast beta-interferon.  One of the three interference parties had disclosed in its application a
    method for isolating a fragment of the DNA encoding beta-interferon and a method for isolating the mRNA encoding human
    beta-interferon using this fragment, but had not disclosed the complete DNA sequence encoding human beta-interferon.  The Board determined that this party’s application did not contain a
    written description of a DNA encoding human
    beta-interferon since the application did not disclose the nucleotide sequence
    or "an intact complete gene."(20)

    The Federal Circuit affirmed the Board’s determination,
    holding that "[a]n adequate written description of a DNA requires more than a mere statement that it is part of the invention and
    reference to a potential method for isolating it; what is required is a
    description of the DNA itself."(21)  The disclosure of a method of isolating a DNA,
    absent the disclosure of its complete sequence, therefore, failed to
    "reasonably convey to the artisan that the inventor had possession at that
    time of the . . . claimed subject matter."(22)  In reaching this decision, the Court reasoned
    that the disclosure of a workable method for preparing a DNA did not establish a conception of the DNA,
    and thus, could not satisfy the written description requirement. The Court, relying on its earlier decision in
    Amgen Inc. v. Chugai Pharmaceutical Co., noted that "when an inventor is
    unable to envision the detailed chemical structure of the gene so as to
    distinguish it from other materials, as well as a method for obtaining it,
    conception has not been achieved until reduction to practice has occurred,
    i.e., until after the gene has been isolated."(23)  Thus, "if a conception of a DNA requires a precise definition, such as by structure, formula, chemical name, or
    physical properties . . . then a description also requires that degree of specificity,"
    since "one cannot describe what one has not conceived."(24)

    The Fiers decision explicitly informed the decision of
    both the District Court and the Federal Circuit in Eli Lilly.  In Eli Lilly, the Regents of the University of California appealed a lower
    court’s finding that Eli Lilly’s production of recombinant DNA human insulin products did not infringe two University of California patents, and further,
    that one of the patents was invalid.  At
    trial, Eli Lilly asserted that the University of California’s claims to human
    proinsulin DNA were invalid because the
    inventors failed to provide the requisite written description of the claimed
    subject matter.  The University of
    California countered that by identifying the rat insulin DNA sequence, it was entitled to claim all vertebrate and mammalian insulin DNA sequences, and in particular that by disclosing the rat sequence, the human
    amino acid sequence, and a method for isolating the human sequence, it was
    permitted to claim human insulin DNA.  Thus, at issue was whether isolation and
    characterization of one species allowed an inventor to claim a genus of which
    that species is a member, as well as other species from that genus.(25)  The District Court determined that the
    "patent [in suit] adequately describes only the rat insulin cDNA"
    because "the isolation and characterization of the proinsulin cDNA from
    one member of a genus is not sufficient to support claims to the insulin cDNA
    of thousands and thousands of other species from that genus."(26)  As a consequence of its analysis, the
    District Court found the University of California’s claims to
    vertebrate, mammalian, and human insulin invalid.

    In reviewing the lower court’s decision, the Federal
    Circuit noted that "[d]escribing a method of preparing a cDNA or even
    describing the protein that the cDNA encodes . . . does not necessarily
    describe the cDNA itself."(27)  The
    Court determined that since "a cDNA is not defined or described by the
    mere name ‘cDNA,’ even if accompanied by the name of the protein that it
    encodes," an adequate written description of that DNA often "requires a kind of specificity usually achieved by means of the
    recitation of the sequence of nucleotides that make up the DNA."(28)  The Court found, therefore, that because the University of California’s specification did
    not disclose the human insulin DNA sequence,
    it did not fulfill the written description requirement in support of a claim to
    human insulin DNA.

    Turning to the question of whether the disclosure of the
    rat insulin DNA sequence adequately
    described the genus of vertebrate insulin DNA sequences or that of mammalian insulin DNA sequences, the Court held that "a generic statement such as ‘vertebrate
    insulin cDNA’ or ‘mammalian insulin cDNA,’ without more, is not an adequate
    written description of the genus because it does not distinguish the claimed
    genus from others, except by function," and further, "does not define
    any structural features commonly possessed by members of the genus that
    distinguish them from others."(29)  The Court found that the University of California’s disclosure of a
    single species did not adequately describe a broad genus, reasoning that in
    cases "where there is unpredictability in performance of certain species
    or subcombinations other than those specifically enumerated, one skilled in the
    art may be found not to have been placed in possession of a genus."(30)  However, because inventors are not required
    to disclose every species encompassed by their claims even in an unpredictable
    art, the Court held that:

    [a] description of a genus of cDNAs may be achieved by
    means of a recitation of a representative number of cDNAs, defined by
    nucleotide sequence, falling within the scope of the genus or of a recitation
    of structural features common to the members of the genus, which features
    constitute a substantial portion of the genus."(31)

    The next opportunity for the Court to explore the
    contours of the written description requirement as it is applied to
    biotechnological inventions was the Enzo Biochem case.  Enzo Biochem involved an appeal of a District
    Court decision in an infringement action granting the accused infringers’
    motion for summary judgment that Enzo Biochem’s claims were invalid for failure
    to meet the written description requirement.  The subject matter of the patent at issue in
    this case related to nucleic acid probes that selectively hybridize to the
    genetic material of the bacteria that cause gonorrhea, Neisseria gonorrhoeae,
    and not to the genetic material of a closely related bacterial species,
    Neisseria meningitidis.  Enzo Biochem had
    derived three such probes, and deposited the probes in the form of a
    recombinant DNA molecule within an E. coli
    bacterial host with a suitable biological depository (i.e., one complying with
    37 C.F.R. § 1.803).  Enzo Biochem’s
    claims were directed to a composition comprising the deposited probes,
    compositions comprising probes that bind to N. gonorrhoeae in a preferential
    ratio of "greater than about five" with respect to N. meningitidis (a
    genus of compositions that includes the deposited probes), and assays for
    detecting N. gonorrhoeae using these compositions.  The District Court determined that reference
    to the deposited probes in the specification did not inherently disclose that
    the inventors were in possession of the claimed sequences, and that a
    composition of matter defined only by its biological activity or function
    (i.e., the ability to hybridize to N. gonorrhoeae in a preferential ratio of
    "greater than about five" with respect to N. meningitidis) did not
    adequately describe that composition, and therefore, found the patentee’s
    claims invalid.

    The Federal Circuit initially upheld the District Court’s
    determination that reference to the deposited probes in the specification did
    not inherently disclose that the inventors were in possession of the claimed
    sequences, asserting that "a deposit is not a substitute for a written
    description of the claimed invention."(32)  The Federal Circuit also agreed with the lower court’s determination
    that a composition of matter defined only by its biological activity or
    function did not adequately describe that composition, asserting that the
    "description of the ability of the claimed probe to bind to N. gonorrhoeae
    may describe the probe’s function, [but] it does not describe the probe
    itself."(33)  The Court noted that
    Enzo Biochem was merely claiming "anything that works, without defining
    what works."(34)

    In a lengthy dissent, Judge Dyk questioned the majority’s
    refusal to allow an inventor to satisfy the written description requirement by
    making a biological deposit, contending that "[a] description by reference
    to the deposited sample provides a precise and unmistakably clear description
    of the invention that is accessible to the public."(35)  Judge Dyk also questioned the majority’s
    determination that the ability of a probe composition to preferentially
    hybridize to the DNA of a particular
    bacterial species was only a description of that composition’s biological
    activity or function.  Instead, Judge Dyk
    argued that the distinguishing property of the claimed nucleotide sequences (to
    hybridize to the DNA of a particular
    bacterial species) was "a direct result of the structure of the nucleotide
    sequence."(36)  Finally, Judge Dyk
    also questioned the correctness of the Court’s earlier decision in Eli Lilly,
    contending that the Court had departed from the general rule that an inventor
    satisfies the written description requirement by "’convey[ing] with
    reasonable clarity to those skilled in the art that, as of the filing date
    sought, he or she was in possession of the invention,’ and imposing a unique
    written description requirement in the field of biotechnology."(37)

    As it turns out, Judge Dyk’s views, at least with regard
    to the deposit and hybridization questions, ultimately prevailed.  A little more than three months after
    reaching the decision affirming the District Court’s finding of invalidity, the
    Federal Circuit granted Enzo Biochem’s petition for rehearing, vacated its
    earlier decision, and remanded the case back to the lower court to determine
    whether Enzo Biochem had adequately described the claimed probe compositions
    and assays.(38)  With regard to its earlier
    assertion that a biological deposit could not satisfy the written description
    requirement, the Court held that "reference in the specification to a
    deposit in a public depository, which makes its contents accessible to the
    public when it is not otherwise available in written form, constitutes an
    adequate description of the deposited material sufficient to comply with the
    written description requirement."(39)  Moreover, with regard to its earlier assertion that the ability of a
    probe composition to preferentially hybridize to the DNA of a particular bacterial species was only a description of that composition’s
    biological activity or function, the Court noted that "[i]t is not correct
    . . . that all functional descriptions of genetic material fail to meet the
    written description requirement."(40)  In fact, the Court was now of the belief that under the Patent and Trademark
    Office’s Written Description Guidelines,(41) Enzo Biochem could satisfy the
    written description requirement for all of its claims "if the functional
    characteristic of preferential binding to N. gonorrhoeae over N. meningitidis
    were coupled with a disclosed correlation between that function and a structure
    that is sufficiently known or disclosed."(42)

    Concurrent with the Federal Circuit’s decision to vacate
    its earlier decision, the Court also declined to hear the case en banc.(43)  This opinion, having no precedential value
    outside the Enzo Biochem litigation, is nonetheless instructive of the Federal
    Circuit judges’ view of the present state of written description
    jurisprudence.  Judge Lourie, who
    authored both of the Court’s Enzo Biochem opinions, reasserted that
    "simply acknowledging the presence of a DNA that serves a particular function, whose existence has been postulated since,
    perhaps, Mendel, plus a general process for finding it, is not a description of
    the DNA," but rather "is a
    research plan at best, and does not show ‘possession’ of any
    invention."(44)  Judge Lourie also
    asserted that "written description law . . . is sound and does not need
    revision,"(45) a position countered by Judge Rader’s opinion that both Eli
    Lilly
    and Enzo Biochem "have purported to create a new disclosure doctrine
    [from the written description requirement] that supplants [the] enablement
    [requirement]."(46)  Judge Dyk once
    again questioned the correctness of the Court’s decision in Eli Lilly, but
    believed that the Court would "benefit from further percolation of these
    issues."(47)  Judge Linn noted that
    because the Court had not taken a clear and uniform position regarding the
    purpose and meaning of the written description requirement, "the panel [in
    Enzo Biochem] conflates and perpetuates the confusion our precedent has
    engendered between written description as a separate requirement
    ("possession of the invention") – an issue relevant to priority – and
    enablement – an issue relevant to the sufficiency of the disclosure."(48)  Perhaps of greater interest to an inventor
    (or attorney) wishing to draft a patent application that satisfies the written
    description requirement, Judge Lourie outlined a process by which such an
    application might be prepared:

    [W]hat one usually does first in making or isolating a
    chemical or chemical-related invention is to obtain a specific material or
    materials.  One then broadens the concept
    to extend it as far as one envisions that other materials will have the same utility
    and can be similarly made.  That
    broadened concept becomes the genus in a patent application that is both the
    broadest statement constituting a written description and usually claim 1.  One then elaborates to fill in the genus with
    representative examples of compounds or substances that fall within the
    genus.  That is part of the written
    description needed to support the generic claim.(49)

    This has not been the last word from the Federal Circuit
    on the written description question: the Court has more recently addressed the
    issue in several other decisions, each of which further explicate the Court’s
    views.  One such case is Amgen Inc. v.
    Hoechst Marion Roussel, Inc.
    , where Hoechst Marion Roussel, Inc. and
    Transkaryotic Therapies, Inc. appealed a lower court’s finding that, inter alia,
    Amgen’s claims for producing human erythropoietin in vertebrate and mammalian
    cells were not invalid.  The District
    Court determined that the detailed descriptions in Amgen’s application of
    erythropoietin production in cell lines derived from two mammalian species
    (i.e., monkey COS-1 and hamster CHO cells) informed those of skill in the art
    that Amgen possessed an invention encompassing erythropoietin production in all
    mammalian cells grown in culture.(50)  In
    affirming the lower court’s determination, the Federal Circuit noted that the
    instant case could be distinguished from both Eli Lilly and Enzo Biochem
    "because the claim terms at issue here are not new or unknown biological
    materials that ordinarily skilled artisans would easily miscomprehend."(51)  In comparing the generic language of the
    claims in Eli Lilly (i.e., vertebrate insulin cDNA and mammalian insulin cDNA)
    with the generic language of the claims in this case (i.e., vertebrate cells
    and mammalian cells), the Court determined that only in the latter situation do
    "the words ‘vertebrate’ and ‘mammalian’ readily ‘convey[] distinguishing
    information concerning [their] identity’ such that one of ordinary skill in the
    art could ‘visualize or recognize the identity of the members of the genus.’"(52)

    Another recent Federal Circuit case, Noelle v. Lederman,
    involved an appeal from a decision of the Board of Patent Appeals and
    Interferences in an interference proceeding related to an antibody (CD40CR
    antibody) that represses cell-to-cell signaling interaction between helper
    T-cells and B-cells.  The Court affirmed
    the Board’s rejection of Noelle’s claims to the human CD40CR antibody, noting
    that while Noelle’s specification provided an adequate description of the mouse
    CD40CR antibody, it failed to satisfy the written description requirement for
    the human antibody because it did not disclose the structural elements of the
    human CD40CR antibody or its antigen.(53)  The Court stated that Noelle was "attempt[ing] to define an unknown
    by its binding affinity to another unknown."(54)

    While the Court in Noelle acknowledged that "a
    patentee of a biotechnological invention cannot necessarily claim a genus after
    only describing a limited number of species because there may be
    unpredictability in the results obtained from species other than those
    specifically enumerated," it also recognized the suggestion set forth in
    Enzo Biochem that the written description requirement could be met for all of
    the claims in a patent if the functional characteristic of the claimed
    invention were coupled with a disclosed correlation between that function and a
    structure that is sufficiently known or disclosed.(55)  In the eyes of the Noelle Court, the Enzo
    Biochem
    Court had "adopted the [Written Description] Guidelines as persuasive
    authority for the proposition that a claim directed to ‘any antibody which is
    capable of binding to antigen X’ would have sufficient support in a written
    description that disclosed ‘fully characterized antigens.’"(56)  As a result, the Court determined that
    "as long as an applicant has disclosed a ‘fully characterized antigen,’
    either by its structure, formula, chemical name, or physical properties, or by
    depositing the protein in a public depository, the applicant can then claim an
    antibody by its binding affinity to that described antigen."(57)  Because Noelle had not disclosed a fully
    characterized human CD40CR, he was prohibited from claiming the human CD40CR
    antibody by its binding affinity to that antigen.

    The most recent case informing the Court’s interpretation
    of the meaning of the written description requirement is University of Rochester v. G.D. Searle &
    Co
    .  In this case, the University of
    Rochester appealed the District Court’s finding that its patent was
    invalid.  The patent in suit related to a
    novel pain relief medication that does not produce certain undesirable side
    effects, particularly stomach irritation, associated with many other pain
    relievers including such staples as aspirin, acetominophen, and ibuprofen.  Researchers at the University of Rochester
    had discovered the existence and separate functions of two distinct enzymes
    (cyclooxygenases), referred to as COX-1 and COX-2.  While COX-1
    is expressed in and serves a beneficial role in the stomach, COX-2
    is expressed in response to inflammatory stimuli and is thought to be
    responsible for the inflammation and accompanying pain associated with diseases
    such as arthritis.  University of
    Rochester researchers, therefore, theorized that if a method were found for
    inhibiting the activity of only COX-2,
    without affecting COX-1 activity, it would
    be possible to provide relief from pain and inflammation without the
    gastrointestinal side effects associated with conventional pain relievers that
    affect the activity of both COX-1 and COX-2. The claims of the patent in suit are directed
    to a "method for selectively inhibiting PGHS-2 [COX-2]
    activity in a human host" in which "the activity of PGHS-1 [COX-1]
    is not inhibited."  On the day that
    the University of Rochester patent issued, the University sued G.D. Searle
    & Co., Inc., Monsanto Co., Pharmacia Corp., and Pfizer Inc., alleging that
    the defendants’ sale of its COX-2 inhibitors
    CELEBREX and BEXTRA for treatment of inflammation infringed the University of
    Rochester patent.

    The issue at trial was "whether a written
    description of a claimed method of treatment is adequate where a compound that
    is necessary to practice that method is described only in terms of its
    function, and where the only means provided for finding such a compound is essentially
    a trial-and-error process."(58)  The
    District Court determined that such a description was not adequate, and that
    the University of Rochester’s
    specification lacked "any suggestion that the inventors had identified so
    much as one compound that would be suitable for use in practicing the claimed
    invention."(59)  The Court added that
    the specification "contains no information by which a person of ordinary
    skill in the art would understand that the inventors possessed the claimed
    invention," and at best, "simply indicates that one should run tests
    on a wide spectrum of compounds in the hope that at least one of them will
    work."(60)  The Court stated that:

    It means little to "invent" a method if one
    does not have possession of a substance that is essential to practicing that
    method.  Without that substance, the
    claimed invention is more theoretical than real; it is, as defendants argue,
    akin to "inventing" a cure for cancer by utilizing a substance that
    attacks and destroys cancer cells while leaving healthy cells alone. Without possession of such a substance, such
    a "cure" is illusory, and there is no meaningful possession of the
    method.(61)

    Finally, the Court noted that it was not persuaded by the
    University of Rochester’s contention that because the claims of the patent in
    suit were directed to a method of selectively inhibiting COX-2
    activity rather than to a DNA sequence, the
    written description standards set forth in Fiers, Eli Lilly, and Enzo Biochem
    did not apply.(62)

    In affirming the lower court’s determination of
    invalidity, the Federal Circuit agreed with the University of Rochester that the University’s
    case differed from Fiers, Eli Lilly, and Enzo Biochem because those cases
    related to genetic material and one before the Court did not.  However, the Court found this distinction to
    be unhelpful since "[i]t is irrelevant; the statute applies to all types
    of inventions."(63)  In analyzing the
    compounds of the claimed methods in view of the structure-function test set
    forth in Enzo Biochem and reasserted in Noelle, the Court noted that in
    contrast to complementary nucleotide sequences, which may be readily envisioned
    given the sequence of a single strand of DNA or RNA, "[e]ven with the
    three-dimensional structures of enzymes such as COX-1
    and COX-2 in hand, it may . . . not be
    within the ordinary skill in the art to predict what compounds might bind to
    and inhibit them."(64)

    Although the Federal Circuit has warned that each case
    involving the issue of written description, "must be decided on its own
    facts," and therefore, that "the precedential value of cases in this
    area is extremely limited,"(65) in fact, the Court’s decisions in these
    cases (Fiers, Eli Lilly, Enzo Biochem, Amgen Inc., Noelle, and University of
    Rochester
    ), have added greatly to our understanding of how the Court will apply
    the written description requirement in applications directed to
    biotechnological inventions.  However, it
    is also clear that the written description issue is far from being settled law,
    and that in applications directed to biotechnological inventions, it will no
    doubt "benefit from further percolation,"(66) if not long-term brewing.

    Footnotes:
    (1) 35 U.S.C. § 112 (2003).
    (2) University of Rochester v. G.D. Searle & Co., 358
    F.3d 916, 921 (Fed. Cir. 2004).
    (3) Amgen Inc. v.
    Hoechst Marion Roussel, Inc.
    , 314 F.3d 1313, 1330 (Fed. Cir. 2003).
    (4) Enzo Biochem, Inc. v. Gen-Probe Inc., 42 Fed. Appx.
    439, 446 (Fed. Cir. 2002) (Rader, J., dissenting) (citing Patent Act of 1793).
    (5) Id. (citing Evans v. Eaton, 20 U.S. 356 (1822)).
    (6) In re Ruschig, 379 F.2d 990 (C.C.P.A. 1967).
    (7) Enzo Biochem, Inc., 42 Fed. Appx. at 447 (Rader, J.,
    dissenting).
    (8) Id. at 458 (Linn, J., dissenting).
    (9) Vas-Cath Inc. v. Mahurkar, 935 F.2d 1555, 1563-64
    (Fed. Cir. 1991) (emphasis added).
    (10) University of Rochester v. G.D. Searle & Co., 249
    F. Supp. 216, 218 (W.D.N.Y. 2003), aff’d, 358 F.3d 916 (Fed. Cir. 2004).
    (11) Regents of the University of California v. Eli Lilly
    & Co.
    , 119 F.3d 1559, 1566 (Fed. Cir. 1997) (citing Lockwood v. American
    Airlines, Inc.
    , 107 F.3d 1565, 1572 (1997)).
    (12) Amgen Inc., 314 F.3d at 1330.
    (13) Vas-Cath Inc., 935 F.2d at 1562.
    (14) 984 F.2d 1164 (Fed. Cir. 1993).
    (15) 119 F.3d 1559 (Fed. Cir. 1997).
    (16) 296 F.3d 1316 (Fed. Cir. 2002).
    (17) 314 F.3d 1313 (Fed. Cir. 2003).
    (18) 355 F.3d 1343 (Fed. Cir. 2004).
    (19) 358 F.3d 916 (Fed. Cir. 2004).
    (20) Fiers v. Revel, 984 F.2d 1164, 1170 (Fed. Cir. 1993).
    (21) Id.
    (22) Id. (citing Vas-Cath Inc., 935 F.2d at 1563).
    (23) Id. at 1169 (citing Amgen Inc. v. Chugai
    Pharmaceutical Co.
    , 927 F.2 1200, 1206 (Fed Cir. 1991)).
    (24) Id. at 1171.
    (25) Regents of the University of California v. Eli Lilly
    & Co.
    , 39 U.S.P.Q.2d (BNA) 1225 (S.D. Ind. 1995), aff’d in part, rev’d in
    part
    , 119 F.3d 1559 (Fed. Cir. 1997).
    (26) Id.
    (27) Regents of the University of California, 119 F.3d at
    1567.
    (28) Id. at 1568-69.
    (29) Id. at 1568.
    (30) Id. (citing In re Smythe, 480 F.2d 1376, 1383
    (C.C.P.A. 1973)).
    (31) Id. at 1568-69.
    (32) Enzo Biochem, Inc. v. Gen-Probe Inc., 62 U.S.P.Q.2d
    (BNA) 1289, 1295 (Fed. Cir. 2002), vacated, 296 F.3d 1316 (Fed. Cir. 2002).
    (33) Id. at 1292.
    (34) Id. at 1293.
    (35) Id. at 1299 (Dyk, J., dissenting).
    (36) Id. at 1298 (Dyk, J., dissenting).
    (37) Id. at
    1297 (Dyk, J., dissenting).
    (38) Enzo Biochem, Inc. v. Gen-Probe Inc., 296 F.3d 1316
    (Fed. Cir. 2002).
    (39) Id. at
    1325.
    (40) Id. at
    1324.
    (41) Guidelines for Examination of Patent Applications
    Under the 35 U.S.C. 112, P1, "Written Description" Requirement
    , 66
    Fed. Reg. 1099 (2001)
    (42) Enzo Biochem, Inc., 296 F.3d at 1324-25.
    (43) Enzo Biochem, Inc. v. Gen-Probe Inc., 42 Fed. Appx.
    439 (Fed. Cir. 2002).
    (44) Enzo Biochem, Inc., 42 Fed. Appx. at 443 (Lourie, J.,
    concurring).
    (45) Id. at
    440 (Lourie, J., concurring).
    (46) Id. at
    453 (Rader, J., dissenting).
    (47) Id. at
    445 (Dyk, J., concurring).
    (48) Id. at
    457 (Linn, J., dissenting).
    (49) Id. at
    443-44 (Lourie, J., concurring).
    (50) Amgen Inc. v. Hoechst Marion Roussel, Inc., 126 F.
    Supp. 2d 69, 148-49 (D. Mass. 2001), aff’d in part, vacated in part, 314 F.3d
    1313 (Fed. Cir. 2003).
    (51) Amgen Inc., 314 F.3d at 1330, 1332.
    (52) Id. at
    1332 (citing Regents of the University of California,
    119 F.3d at 1567-68).
    (53) Noelle v. Lederman, 355 F.3d 1343, 1349 (Fed. Cir.
    2004).
    (54) Id.
    (55) Id. at
    1349-50.
    (56) Id. at
    1349.
    (57) Id.
    (58) University of Rochester,
    249 F. Supp. at 221.
    (59) Id. at
    225.
    (60) Id. at
    224.
    (61) Id. at
    225.
    (62) Id. at
    228.
    (63) University of Rochester,
    358 F.3d at 925.
    (64) Id.
    (65) Vas-Cath Inc., 935 F.2d at 1562.
    (66) Enzo Biochem, Inc., 42 Fed. Appx. at 445 (Dyk, J.,
    concurring).

    This article was originally presented at the Midwestern Biotech Intellectual Property Law Symposium on June 3-4, 2004.

  •     By Kevin Noonan

    The Patent
    and Trademark Office has proposed sweeping changes in "continuation’
    practice (see Part 1) as well as how claims are examined, which were the
    subject of a "townhall" meeting held in Chicago on February 1st with
    Patent Commissioner John Doll and General Counsel James Toupin.

    At present,
    an applicant can file as many claims as they believe are necessary to properly
    encompass her invention.  Under the
    proposed changes, the Office will be required to examine only ten
    "representative" claims, which should include all independent claims,
    and the applicant will have the burden to designate which claims are
    "representative."  If those
    claims are deemed allowable, then the Office will examine undesignated claims
    dependent on any of the designated representative claims.  Examination of these claims will be limited
    to Sections 101 (utility) and 112 (written description/enablement/best mode).

    An
    applicant will retain the right to have all claims examined on the merits, but
    in that case they will be required to perform a search, using US PTO searching
    criteria, and then submit a patentability statement that identifies all claim
    limitations present in the prior art (with specificity) and explains how the
    representative claims are patentable over the prior art.  The decision on
    whether to submit representative claims or the search/patentability information
    can be changed during prosecution at applicant’s election.

    Although
    the Office is also considering changes to Rule 56 regarding the duty of candor,
    under present law the requirement to perform a search and submit a
    patentability statement is fraught with potential liability under the
    inequitable conduct doctrine.  This
    doctrine, widely used, provides the opportunity for a patent infringement defendant
    to have a patent found unenforceable for violation of Rule 56 and the duty of
    candor.  Requiring applicants to submit
    search results and a patentability report greatly increases the opportunities
    for second guessing and unfounded charges of prosecution malfeasance that have
    been a "plague on the patent law" for almost a generation.

    The Patent
    Office, insulated from these considerations (which occur only in patent
    litigation) thus wants to impose a requirement on patent applicants that
    further erodes the type of business certainty that CEO’s,
    in-house patent counsel, and the Federal Circuit Court of Appeals have all said
    is a proper goal of the patent system.

    Comments on
    the proposed changes were accepted until May 3, 2006 at AB93comments@uspto.gov.  The Office received a far greater number of
    responses than anticipated, and they were reported to be predominantly
    negative.  For now, the Office has not
    moved to promulgate these rules, and in view of the firestorm they set off there
    is some doubt about whether these changes will ever be implemented.

    Additional discussion of this topic can be found in Dr. Noonan’s February 3, 2006 article on Patently-O.

  •     By Kevin Noonan

    The U.S. Patent and Trademark Office has proposed
    sweeping changes in patent prosecution practice rules that were discussed at a
    "townhall" meeting held in Chicago on February 1st with Patent
    Commissioner John Doll and General Counsel James Toupin.

    The rules would limit so-called "continuation"
    practice to one per application, and require applicants subject to claim
    restriction (based on claiming more than one invention in a single application)
    to lose the right to pursue the restricted claims after the original
    application grants.

    The consequences of these changes are stunning.  At present, an applicant has the right to
    control the application process by accepting claims of more limited scope to
    get a patent and pursuing non-allowed claims in as many continuations as
    necessary.  Further, applicants who have
    the Office divide their claims into several "inventions" can pursue
    the claims serially, to disperse costs over time and to be able to adapt to
    their business needs.  This is not
    inequitable, since the applicant is losing patent term that cannot be recovered
    for all these prosecution decisions.

    The proposed rule changes strip all such discretion from
    the applicant, and place applicants at the mercy of a patent examining corps
    that the Office admits is overburdened and without sufficient time to properly
    examine applications.  Indeed, Part 2 of this article will address additional
    proposed changes directed towards improving examination quality.

    The inexorable consequence of these changes will be to
    increase dramatically the number of applications that languish in an appeals
    process that even today delays patent grant by several years.  It is difficult to discern how the proposed
    changes will help to solve the purported problems in the Patent Office, but it
    is clear that the changes will hurt innovation by at best delaying and at worst
    frustrating applicants in securing U.S patent rights.

    Disturbingly, the presenters suggested that the practice
    of keeping a continuation "alive" to provide the basis for submitting
    a claim that would ensnare a competitor’s efforts to "design around"
    were improper and contrary to the patent grant.  This practice has been
    countenanced by over a century of Supreme Court precedent, and it is
    questionable whether the Office has the authority to make changes on this
    basis.

    Comments on the proposed changes are being accepted until May 3, 2006 at
    AB94comments@uspto.gov.  Prudence
    suggests that practitioners, and their clients, let the Office know their views
    on these changes.

    Additional discussion of this topic can be found in Dr. Noonan’s February 3, 2006 article on Patently-O.