• Calendar March 25-29, 2007 – American Chemical Society National Meeting – Chicago, IL

    April 13, 2007 – "Of Brics & Mortar: Technological Drivers in Booming Economies" Symposium (Northwestern Journal of Technology and Intellectual Property) – Chicago, IL

    April 16-18, 2007 – Biotechnology: Patent Prosecution, Licensing, Litigation &
    Hatch-Waxman
    (Patent Resources Group) – Orlando, FL

    April 27, 2007 – Patent Claim Construction Workshop (Law Seminars International) – Atlanta, GA

    May 6-9, 2007 – BIO International Convention – Boston, MA

    June 26-28, 2007 – Euro-Biotech Forum 2007 – Paris, France

  •     By Kevin E. Noonan

    Amgen_2
    Since the Federal Circuit’s en banc decision in Cybor Corp. v. FAS Technologies, Inc. that no aspect of a district court’s claim construction was entitled to any deference, courts, commentators, and other critics have
    disagreed with the Federal Circuit.  Today, Amgen has enlisted the aid of the Supreme Court to rein in what it termed a "power grab" by the Federal Circuit in its petition for certiorari
    in Amgen Inc. v. Hoechst Marion Roussel, Inc.

    This case has gone back and forth from the Massachusetts District Court to the Federal Circuit twice, and each time the Federal Circuit has disagreed with the District Court’s interpretation of the term "therapeutically effective amount" in claim 1 of U.S. Patent No. 5,955,422:

    A pharmaceutical composition comprising a therapeutically effective amount of human erythropoietin and a pharmaceutically acceptable diluent, adjuvant, or carrier, wherein said erythropoietin is purified from mammalian cells grown in culture.

    The meaning of this term is important, because the validity of the claim rests upon whether the term requires that the claimed erythropoietin (EPO) be capable of treating or curing anemia.  EPO is a naturally-occurring hormone that stimulates the body to produce red blood cells, and its absence (or insufficiency) causes anemia.  The standard clinical measure of anemia is the hematocrit, or the percent of whole blood comprised of red blood cells.  In construing the term "therapeutically-effective amount," the District Court had required that EPO falling within the scope of claim 1 increase hematocrit and have any other biological properties of naturally-occurring EPO.  Prior art EPO formulations existed that did not have the capacity to increase hematocrit or cure anemia, and this distinction was the basis for the District Court’s finding that said prior art did not anticipate Amgen’s claim.

    The Federal Circuit disagreed.  Under the Court’s interpretation, the District Court had improperly focused on hematocrit, which is one of EPO’s biological properties recited in the specification, to the Fedcir_2
    exclusion of several others, including increasing stimulation of reticulocyte response, development of ferrokinetic effects, erythrocyte mass changes, and stimulation of hemoglobin.  The CAFC noted in particular that the specification recited that the therapeutic properties of recombinant EPO "included" all of these, and that the specification further stated that recombinant EPO was therapeutically useful even if it lacked some but not all of these properties.  For the second time, the Federal Circuit remanded to the District Court for further proceedings based on its more expansive construction of the term "therapeutically effective amount." 

    In its petition, Amgen focused on the differences in understanding between the trial court judge (who Amgen asserted "had received tutorials from an M.I.T. scientist, listened to 32 days of testimony from 35 scientists, and read countless pages of written submissions") and the Federal Circuit.  According to Amgen, the Federal Circuit’s de novo review jurisprudence misappropriated judicial resources and usurped the trial court’s duty of assessing the evidence firsthand.  Amgen cleverly analogized to the Supreme Court’s Daubert jurisprudence, where the Court has commented on its confidence in district court judges’ ability to understand complex scientific and factual evidence.  In the Daubert analysis, the Supreme Court has directed appellate courts to defer to such factual findings by the district courts, the outcome Amgen advocates here.

    Amgen also recites the now-familiar litany of negative consequences of the Federal Circuit’s de novo review standard, including "(1) a steadily high reversal rate; (2) a lack of predictability about appellate outcomes, which may confound trial judges and discourage settlements; (3) loss of the comparative advantage often enjoyed by the district judges who heard or read all of the evidence . . .; and (4) inundation of our court with the minutia of . . . disputed claim terms . . . in nearly every patent case," citing Judge Michel’s dissent from the Federal Circuit’s denial of rehearing en banc.  Finally, Amgen stresses that this issue is ripe for Supreme Court review in light of the disagreement between the Federal Circuit judges, reminding the Supreme Court that it used this rationale for granting certiorari in Warner-Jenkinson and Festo.

    Amgen also asked the Supreme Court to review the Federal Circuit’s determination that prosecution history estoppel prevented it from prevailing on another of its claims in suit.  This claim recites recombinant EPO containing 166 amino acids, as determined from the predicted amino acid sequence encoded by the EPO cDNA.  In fact, human EPO as it is found in nature contains only 165 amino acids, 4united_states_supreme_court_1129_2
    since the 166th amino acid is cleaved during the protein’s maturation process.  The District Court twice found that prosecution history estoppel did not prevent Amgen from asserting this claim against the defendants under the doctrine of equivalents, and twice the Federal Circuit disagreed.  In its certiorari petition, Amgen contends that the manner in which the Federal Circuit is implementing the Supreme Court’s edicts regarding the application of the prosecution history estoppel doctrine is tantamount to the Federal Circuit’s own, draconian, and Supreme Court-repudiated "no equivalents" standard for any claim amended during prosecution.  In Festo, the Supreme Court had explicitly rejected this approach, mandating that the Federal Circuit’s analysis consider whether the amendment was unforeseeable, was tangential to patentability, or for some other reason should not raise an estoppel.  Festo Corp. v. Shoketsu Kinzoku Kogyo Kabushiki Co., 535 U.S. 722, 740-41 (2002).  By including the prosecution history estoppel issue in its certiorati petition, Amgen has significantly increased its chances of having the petition granted, since the Supreme Court has been diligent in the past ten years in
    defending the doctrine of equivalents from a consistent effort by the
    Federal Circuit to minimize or eliminate application of the doctrine.

    Supreme Court review of the Federal Circuit’s application in Cybor of the principles it set forth in Markman has been anticipated and welcomed by many.  A significant minority of the Federal Circuit judges have, in dissent, indicated that the Court’s application of the Cybor decision (i.e., that the Court owes the District Court no deference even for factual matters related to claim construction) did not work well in practice and was ripe for review.  The Court might have lost its opportunity to address these issues itself, and inadvertently provided the Supreme Court with another opportunity to overturn Federal Circuit precedent, a pastime it has become accustomed to in the last few years.

  •     By Bradley Crawford

    Epologo
    In 1998, the Administrative Council of the European Patent Organisation, seeking to update the European Patent Convention (EPC), agreed on a catalog of potential revisions (see "EPC 2000").  A Task Force was then formed to prepare detailed proposals for revision of the EPC, which were examined and refined in meetings of the Organisation’s Committee on Patent Law.  The Committee produced nearly one hundred changes to the EPC, which were collected in the Basic Proposal for the Revision of the EPC.  The Administrative Council adopted the Basic Proposal in September of 2000, and submitted it to the Conference of the Contracting States, which adopted the changes as EPC 2000 two months later.  Following ratification of the EPC 2000 by Greece on December 13, 2005, the date by which the EPC 2000 would enter into force was set (see "Status of accession and ratification").  Thus, the EPC 2000 will take effect by December 13, 2007, at the latest.

    Many aspects of European patent law will be impacted by the EPC 2000, some significantly.  The actual changes to all of the EPC Articles may be found here, while the completely revised articles (in German, English, and French) may be found here.  Since there are so many changes, we are starting a multi-part series in which we will highlight – from a U.S. patent practitioner’s perspective – some of the changes that will take effect.  In the first installment of this series, we will discuss the changes to "use" claims.

    As a preliminary matter, first medical use claims, which may be written as follows, are allowable in EPC member states:

    The use of a compound or pharmaceutically acceptable salt thereof as a medicament.

    Of course, other formats for first medical use claims are also perfectly acceptable.

    While the patentability of first medical use claims has long been recognized, there was some question regarding the status of second medical use claims, i.e., claims directed towards a specific medical use.  This problem was addressed by the Enlarged Board of Appeals in G 5/83 (OJ EPO, 1985, 64), where second medical uses were approved when applicants use the "Swiss" format, which gets its name from the Swiss Patent Office, where it originated.  A "Swiss" claim has the following general format:

    The use of X for the preparation of a medicament for the treatment of Y.

    Second medical use claims, however, are not expressly authorized by the EPC articles.  In order to clarify the status of second medical use claims, amendments were made to Articles 54(4) and 54(5) EPC, the new text of which appears below:

        (4)  Paragraph 2 and 3 shall not exclude the patentability of any substance or composition, comprised in the state of the art, for use in a method referred to in Article 53(c), provided that its use for any such method is not comprised in the state of the art.
        (5)  Paragraph 2 and 3 shall also not exclude the patentability of any substance or composition referred to in paragraph 4 for any specific use in any method referred to in Article 53(c), provided that such use is not comprised in the state of the art.

    It is now clear that second medical use claims are patentable.  In light of these amendments, "Swiss" claims are being phased out as redundant, and therefore, unnecessary.  Of course, first medical use claims are still patentable.

    One way to draft first and second medical use claims is:

    10.  The use of a compound or pharmaceutically acceptable salt of claim 1 as a medicament.

    11.  The use according to claim 10, wherein the medicament is suitable for use in treating condition Y or is suitable for use in patients who are at risk of developing condition Y.

    (The claim numbers are chosen at random.)  As a result of these changes in the EPC, the use of "Swiss" claims can be expected to cease, not because they are not valid but because they are no longer necessary.

    Epc_states_2

    Mr. Crawford is a registered patent attorney at the law firm of McDonnell Boehnen Hulbert & Berghoff LLP, where he focuses on chemical and pharmaceutical patent preparation and prosecution.  He has a master’s degree in organic chemistry from the University of Illinois, has worked as a bench chemist in the pharmaceutical industry, and is a named inventor on three U.S. Patents.

    As noted here, Mr. Crawford will be giving a presentation on "International patent protection and strategy" at the American Chemical Society Spring 2007 meeting in Chicago, IL on March 28th.

    Additional Disclaimer:  This article, like all articles on Patent Docs, is intended for informational purposes only, and does not contain any legal advice whatsoever.  Moreover, Mr. Crawford is not a European patent attorney.  Readers having questions about the impact of the EPC 2000, therefore, should seek the advice of European patent counsel.

  •     By Kevin E. Noonan

    Somewhere between Darwin’s
    On the Origin of Species and Watson and Crick’s discovery of the double helix,
    biology changed from its roots as "natural history" into a modern
    science.  Biology (and biologists) retain
    some residual fondness for the "butterfly collecting" aspects of the
    profession, however; something illustrated by the resistance that arises
    whenever a "big science" project is proposed to solve a biological
    problem.  This is something that doesn’t
    happen, for example, in physics, where each new supercollider project is
    understood to be necessary for future progress.

    Header_left
    This reticence was evident at the onset of the Human
    Genome Project (HGP), and has come up again in the latest genome mapping
    project: the Cancer Genome Atlas (TCGA).  The goal of this project is to map mutations
    in various human cancers, to identify cancer-specific changes in tumors,
    including those in common between different tumors and those unique to
    particular tumor types (such as breast cancer).  Cancer etiology has been known to be associated with acquired mutation
    since the work of Doll in the 1950’s, and tumor cells themselves are
    characterized by genetic instability, developing, for example, aneuploidy (an
    abnormal number of chromosomes), chromosomal translocation (for example, the
    Philadelphia chromosome in chronic myelogenous leukemia), and increased
    mutation frequency.  Besides building on
    the success of the HGP strategy, the concept is a logical extension of work in
    colon cancer over the past few decades, where specific genetic mutations have
    been associated with risk for and ultimately developing colon cancer.  The
    strategy, and the fruits of the strategy, can be seen in a recent report by Greenman et al. on
    colon cancer genetics in the journal Nature.

    Sequence
    The dissenters argue that this is a waste of time and money,
    and will prejudice funding for other projects (a complaint raised against the
    HGP that did not in the event occur).  The most important criticism is that the tumor tissue used for the
    studies (biopsy and pathological samples from the primary tumor) will not
    include the purportedly rare (1 in 50,000) "metastatic" cell, the
    progenitor of the cells responsible for characterizing a tumor as
    malignant.  This cell, according to the
    dissenters, arises early in tumorigenesis and has been dispersed from the primary
    tumor site long before an individual is diagnosed with cancer; hence, the
    "most important" mutations will be missed by TCGA.  Moreover, the argument goes, the genetic
    instability that causes increased mutation frequency in cancer cells will
    render most of the detected mutations meaningless because they are not
    "responsible" for cancer but are simply consequences of and
    irrelevant to the tumorigenesis.

    These issues, which are not trivial, seem to miss the
    point.  Even if a particular mutation
    that is found to arise in many different cancer types is not "responsible"
    for tumor development, its presence may provide a target for chemotherapeutic
    intervention (particularly if the mutation renders the tumor cells much more
    susceptible to the drug than normal cells).  It is also possible that the primary tumor will bear traces of the
    mutations responsible for metastasis, traces than can be correlated with
    clinical outcomes that will provide clues to these elusive genes.  Most importantly, just like the HGP, TCGA
    will provide a wealth of data that, in the aggregate, are likely to provide
    some surprising and unexpected insights into cancer cell biology, a result that
    even the dissenters will be hard pressed to deny will advance our understanding
    of the disease.

    Tolstoy said "All happy families resemble one
    another; every unhappy family is unhappy in its own way." Whether cancer cells most resemble happy or
    unhappy families is but one of the expected consequences of TCGA and one that
    has the prospect of providing unexpected and useful information unlikely to be
    obtained any other way.  For that reason
    alone it deserves support.

  •     By Kevin E. Noonan

    165576w
    Before starting the Iraq war, the Bush Administration action with the most long-lasting effect and significance was its decision, in August 2001, to restrict Federal funding of human embryonic stem cell research.  The government refused to fund research on any stem cell line not existing at the time of the ban, despite evidence at the time of the ban and in the interim that the decision was based on a vast overestimate on the number and viability of the stem cell lines then existing.

    As a consequence, many advances in stem cell research have been made abroad, in Singapore, Australia, Korea, and other countries not hampered by the ban.  These consequences have been decried in many quarters (see "Stem Cells a Go! in Caifornia" and "Limitations on the Usefulness of Adult Stem Cells"), enlisting such notables as Michael J. Fox, the Parkison’s disease-afflicted actor, and Nancy Reagan.

    Nihez4c_building_vert300
    The National Institutes of Health (NIH) have gone along with the ban with little to no public protest – that is, until yesterday.  Dr. Elias Zerhouni, NIH chief, testified before Congress that lifting the ban on Federal funding of stem cell research is in the best interests of both science and the nation.  Dr. Zerhouni likened the current situation to fighting "with one hand tied behind our back," and said we cannot afford to be "second best" in the area of stem cell research.  Dr. Zerhouni’s comments came during testimony before a Senate health appropriations subcommittee holding hearings on the proposed NIH 2008 budget.

    Although Congress has attempted several times to overturn the ban, the Administration has vetoed any change.  Several states, most notably California, as well as private funding sources have stepped into the void created by the Bush ban, but these efforts have not been able to fully compensate for the Federal government’s abandonment of stem cell research.  The consequences of the ban, and the fitful efforts to maintain America’s lead in cutting-edge biotechnology innovation, will be the subject of coming posts.

  • Brics & Mortar The second annual symposium of the Northwestern Journal of Technology and Intellectual Property will be held at the Northwestern University School of Law on April 13, 2007.  The symposium, entitled "Of Brics & Mortar: Technological Drivers in Booming Economies" will provide a discussion on a number of topics that may determine whether developing economies (the "BRICs," Brazil, Russia, India, and China) can continue to advance and grow.  A number of professionals are scheduled to speak, with James E. Malackowski, President and CEO of Ocean Tomo, LLC (see "Ocean Tomo 300 Patent Index Makes the Intagible Very Tangible") to provide the keynote address.

    More information regarding the conference can be found at the symposium's website.

  •     By Donald Zuhn

    Logo_nimble
    Last Friday, NimbleGen Systems, Inc. announced that it had filed a registration statement with the Securities and Exchange Commission for a proposed initial public offering of its common stock.  According to NimbleGen’s press release, neither the number of shares nor the offering price had yet been determined.  MarketWatch and Forbes.com, however, have reported that NimbleGen is looking to raise $75 million in the IPO.  MarketWatch reported also noted that NimbleGen is seeking to list its shares on the Nasdaq Global Market under the symbol "NMBL."  According to a Forbes.com report, NimbleGen’s prospectus indicates that the company has incurred net losses each year since its inception in 1999, and as of end of 2006 had accumulated a deficit of about $44.5 million.

    NimbleGen is a Madison, Wisconsin-based biotech company focusing on the manufacture and use of high-density DNA microarrays for applications other than differential gene expression analysis.  In particular, NimbleGen’s microarrays are useful for analyses of human genomic DNA copy number variation, transcription regulation and chromatin structure, DNA methylation, and DNase hypersensitivity, and rapid microbial resequencing and SNP detection.

    NimbleGen’s patent portfolio includes U.S. Patent No. 7,037,659, directed to an apparatus for constructing DNA probes, and U.S. Patent No. 7,157,229, directed to a prepatterned substrate for optical synthesis of DNA probes.  NimbleGen’s portfolio also appears to include at least thirteen U.S. patent application publications, all of which list Francesco Cerrina as an inventor.  Dr. Cerrina, who is a named inventor on both the ‘659 and ‘229 patents, is a member of NimbleGen’s Board of Directors and its Scientific Advisory Board.

  • Windhover Information Inc. will be holding the 14th Annual Euro-Biotech Forum 2007 on June 26-28, 2007 in Paris, France.  According to Windhover, Euro-Biotech offers European and American life sciences companies an opportunity to network with hundreds of potential pharmaceutical and biotech partners, with one to one meetings between Forum participants being scheduled using Windhover's partnering software.  A schedule of events for Euro-Biotech 2007 can be obtained here.  Information regarding registration pricing can be obtained here.

    Conflogo_2

  •     By Donald Zuhn

    Codon_home_header
    As Patent Docs reported yesterday, Codon Devices, Inc., Duke University, and the Massachusetts Institute of Technology filed suit against Blue Heron Biotechnology on March 14th, asserting that Blue Heron’s manufacture and use of the GeneMaker® gene synthesis platform infringes plaintiffs’ U.S. Patent Nos. 5,459,039; 5,556,750; 5,679,522; 5,702,894; and
    5,750,335
    .  The ‘039, ‘750, ‘522, and ‘894 patents are assigned to Duke University and the ‘335 patent is assigned to the Massachusetts Institute of Technology; Codon Devices is the exclusive licensee of all five asserted patents.  In a statement released one day after the patent infringement action was filed, Blue Heron contended that it "has performed an initial assessment of Codon’s Blueheron
    claims and believes that there is no basis in fact for the allegations of patent infringement."  Blue Heron founder and CSO John Mulligan contended that:

    In its eight years of operation, Blue Heron has always maintained the highest levels of integrity in matters of intellectual property development and application and we are confident that Codon’s action will be shown to be without merit.  Blue Heron intends to vigorously defend against these baseless claims of patent infringement.

  •     By Sherri Oslick

    Gavel About
    Court Report:  Each week we will report briefly on recently filed
    biotech and pharma cases, and a few interesting cases will be selected
    for periodic monitoring.

    Oklahoma Medical Research Foundation v. Alexion
    Pharmaceuticals, Inc.

    4:07-cv-00163; filed March 15, 2007 in the Northern
    District of Oklahoma

    Infringement of U.S. Patent No. 5,635,178
    ("Inhibition of Complement Mediated Inflammatory Response Using Monoclonal
    Antibodies Specific for a Component Forming the C56-9 Complex Which Inhibit the
    Platelet or Endothelial Cell Activating Function of the C56-9 Complex,"
    issued June 3, 1997) based on Alexion's manufacture, use, sale, and offer for
    sale of Soliris® (eculizumab, used to treat paroxysmal nocturnal
    hemoglobinuria (PNH)).  View the
    complaint here.


    Codon Devices Inc. et. al. v. Blue Heron Biotechnology
    Inc.

    1:07-cv-00148; filed March 14, 2007 in the District Court
    of Delaware

    Infringement of U.S. Patent Nos. 5,459,039 ("Methods
    for Mapping Genetic Mutations," issued October 17, 1995), 5,556,750
    ("Methods and Kits for Fractionating a Population of DNA Molecules Based
    on the Presence or Absence of a Base-Pair Mismatch Utilizing Mismatch Repair
    Systems," issued September 17, 1996), 5,679,522 ("Methods of Analysis
    and Manipulation of DNA Utilizing Mismatch Repair Systems," issued October
    21, 1997), 5,702,894 (same title, issued December 30, 1997), and 5,750,335
    ("Screening for Genetic Variation," issued May 12, 1998) based on
    Blue Heron's manufacture and use of GeneMaker®, a gene synthesis
    platform.  View the complaint here.


    Wyeth v. Lupin Ltd. et. al.

    1:07-cv-00632; filed March 12, 2007 in the District Court
    of Maryland

    Infringement of U.S. Patent Nos. 6,274,171
    ("Extended release formulation of venlafaxine hydrochloride," issued
    August 14, 2001), 6,403,120 (same title, issued June 11, 2002), and 6,419,958 (same
    title, issued July 16, 2002) following a paragraph IV certification as part of
    Lupin's filing of an ANDA to manufacture a generic version of Wyeth's EFFEXOR
    XR® (venlafaxine hydrochloride, extended release, used to treat
    depression).  View the complaint here.


    DUSA Pharmaceuticals, Inc. et. al. v. Verebelyi et. al.

    1:07-cv-00486; filed March 12, 2007 in the District Court
    of Colorado

    Infringement of U.S. Patent Nos. 6,710,066
    ("Photochemotherapeutic Method Using 5-aminolevulinic acid and Other
    Precursors of Endogenous Porphyrins," issued March 23, 2004) and 5,955,490
    (same title, issued September 21, 1999) based on Dr. Verebelyi's treatment of
    patients with actinic keratosis using drug products containing aminolevulinic
    acid (the active ingredient in Dusa's Levulan®).  View the complaint here.


    Purdue Neuroscience Co. v. Newron Pharmaceuticals, S.p.a.

    1:07-cv-00487; filed March 12, 2007 in the District Court
    of the District of Columbia

    Review of the decision of the Board of Patent Appeals and
    Interferences awarding priority of invention to Newron in the interference
    between U.S. Patent Application 10/429,764, a reissue application based on U.S. Patent No. 6,479,484 ("Substituted 2-Aminoacetamides and the Use
    Thereof"), owned by Purdue, and U.S. Patent No. 6,306,903 (Alpha-aminoamide
    Derivatives Useful as Analgesic Agents").  View the complaint here.


    Pfizer Inc. et. al. v. Ranbaxy Laboratories Ltd. et. al.

    1:07-cv-00138; filed March 9, 2007 in the District Court
    of Delaware

    Infringement of U.S. Patent Nos. 4,681,893
    ("Trans-6-[2-(3- or 4-carboxamido-substituted pyrrol-1-yl)alkyl]-4-hydroxypyran-2-one
    Inhibitors of Cholesterol Synthesis," issued July 21, 1987) and 6,455,574
    ("Therapeutic Combination," issued September 24, 2002) following
    Ranbaxy's filing of an ANDA to manufacture a generic version of Pfizer's Caduet®
    (atorvastatin calcium – the active ingredient in Lipitor® — and amlodipine
    besylate – the active ingredient in Norvasc® — used to treat high
    cholesterol in combination with treating hypertension, angina, and/or coronary
    artery disease).  View the complaint here.