•     By Kevin E. Noonan

    The significance of single nucleotide polymorphisms (SNPs) has been appreciated in genetic research ever since the discovery in the early 1980’s that SNPs could produce genetic markers known as restriction fragment length polymorphisms (RFLPs).  However, although this type of polymorphism is responsible for well-recognized genetic mutations (for example, in sickle cell anemia, where an A to T transversion mutation changes a glutamic acid to a valine at position six of the amino acid sequence of the  hemoglobin beta-chain), the significance of this type of genetic mutation has been appreciated more than it has been observed – but when observed, such mutations have occasionally been significant (see, for example, U.S. Patent No. 6,051,379).

    A striking example of a SNP that alters gene expression and gene product function has been found in a human gene encoding kallikrein-8 (KLK-8).  KLK-8 is a gene expressed in brain and known to be involved in speech and memory.  It was also known that humans differed from mice in producing a splice variant containing an additional 45 amino acids encoded in the intervening sequence adjoining the third exon (which sequence is spliced out in mice but retained in the mRNA produced in human brain tissue).  The significance of this change has been unappreciated, at least in part due to the phylogenetic distance between mice and man.  The analysis of these differences in species closer to man evolutionarily, specifically chimpanzees and other great apes, sheds new light on its significance.

    As reported on May 8, 2007 in the online version of Human Mutation, scientists from the Chinese Academy of Sciences have identified a transversion mutation in human KLK-8 gene.  As a consequence, human KLK-8 is alternatively-spliced in human brain tissue, with one of the resulting transcripts being identical to the mouse transcript, and the other having an additional 45 amino acids encoded by exon 3.  In their analysis, these researchers showed not only that the "long form" variant was not expressed in other primates (or any other mammalian species studied), but that the capacity for producing this alternatively-spliced transcript was due to an T to A mutation in the intervening sequence between coding exons 2 and 3.  Other primates do not have this mutation, only humans do (and there is no polymorphism detected among different human racial groups, suggesting this mutation is "fixed" in the human genome), and it can be traced to an event that occurred about 5 million years ago.  The mutation creates a "splicing enhancer" sequence that creates the long form transcript for the first time in primate evolution.

    Goodall_2
    It has been evident for some time that the small overall differences between human and chimpanzee genomic DNA (on the order of 1-2%) could explain the phenotypic differences between the species based not on how many genetic sequence differences there are but on which sequences are different.  The possibilities for genetic differences that are responsible for the species differences include those operating at a histological level (such as chromosomal rearrangements, both local and global, and genetic duplication) and on the genetic level (such as SNPs, alternative splicing, and differential gene expression).  Significantly, human neural tissue exhibits a high level of alternative splicing events, one of the proposed mechanisms that reconcile the phenotypic differences between humans and other primates and the relatively small human transcriptome size (30,000-45,000 genes rather than the anticipated ~100,000 human genes).

    The discovery of the KLK-8 mutation, and the existence of transgenic animal technology, suggests the possibility that a transgenic chimpanzee can be produced that expresses the long form of KLK-8 in neural tissues.  Indeed, the only sure way to determine whether this mutation had any effect on neural function would be to make such a transgenic animal.  And this is where it gets interesting (or terrifying, Nim_chimpsky
    depending on your point of view).  KLK-8 is believed to be involved in the physiological mediation of speech in the brain, and the coincidence of the unique abilities of humans for speech and the existence of the long form mutation raises the possibility that any such transgenic chimpanzee would have an enhanced ability to learn to speak.  Classic attempts to teach other primates to speak (notably, "Nim Chimpsky," at left, in the 1970’s) demonstrated that these animals have whatever brain structures or functions are required to be capable of making connections between human words and objects (even emotions).  Thus, a transgenic chimpanzee might be able to speak, and if so, verbal communication with another species could occur for the first time.

    The possibilities for bridging the gap in our understanding of how another species thinks are tantalizing.  Other possibilities are less felicitous, including the realization that such a talking chimpanzee is eminently patentable.  U.S. law has a strict prohibition on patenting humans – the 13th Amendment banning slavery – and attempts by Jeremy Rifkin and others to patent human/animal chimeras have been thwarted by administrative decisions in the U.S. Patent and Trademark Office.  (In this regard, the British Department of Health recently reversed a ban on such chimeras, although it has not yet passed the House of Commons.)  There are no such prohibitions against transgenic primate patenting (transgenic animal patent claims usually recite a "non-human" animal), and given the costs of producing such a transgenic chimp, patent protection may be necessary to garner sufficient investment.

    Whether the results of these studies will resemble "Dr. Doolittle" or "Planet of the Apes" is, of course, impossible to predict.  However, it is likely that anyone (like author Michael Crichton) who is unconvinced about the wisdom of permitting "patenting life" will be politically opposed, and the extent to which such opposition is persuasive will determine the fate of any attempts to own a talking monkey.

    Dr. Noonan has written a number of related articles for Patent Docs, including:

  • Calendar May 30, 2007 – "Patent Law After KSR v. Teleflex: Are Your Patents Still Valid?" (ABA CLE)

    May 30, 2007 – "Stating the Obvious: Patent Protection after KSR" (Managing Intellectual Property)

    May 31, 2007 – "Biotechnology and the Law: A Primer" – Part I (ABA CLE)

    May 31, 2007 – "KSR International Co. v. Teleflex Inc.: Discover How the High Court's Ruling Will Alter the Patent Landscape" (West LEGALworks®)

    June 7, 2007 – "Biotechnology and the Law: A Primer" – Part II (ABA CLE)

    June 13, 2007 – "The Scope and Implications of the Supreme Court's Ruling in KSR v. Teleflex on the Doctrine of Patent Obviousness" (Practising Law Institute)

    June 21-22, 2007 – Technology IP Due Diligence Conference (American Conference Institute) – San Francisco, CA***

    June 21-22, 2007 – Pharma/Biotech Patent Boot Camp (American Conference Institute) – New York, NY***

    June 26-28, 2007 – Euro-Biotech Forum 2007 – Paris, France

    June 28, 2007 – "Patent Licensing Post MedImmune: Proceed with Caution: Best Practices for Adapting to Sweeping Change in Licensing" (Strafford CLE Teleconferences)

    ***Patent Docs is a media sponsor of this conference or CLE.

  • Strafford #1 Strafford CLE Teleconferences will be offering a telephone conference entitled: "Patent Licensing Post MedImmune: Proceed with Caution: Best Practices for Adapting to Sweeping Change in Licensing" on June 28, 2007 from 1:00-2:30 PM (EST).  In January, the Supreme Court rejected the Federal Circuit's long-standing "reasonable apprehension of suit" test in MedImmune v. Genentech, changing the legal landscape for patent licensing.  In late March, the Federal Circuit substantively applied the MedImmune decision for the first time in SanDisk v. STMicroelectronics, holding that a patent owner that asserts infringement against another entity to demand licensing and royalties cannot prevent the alleged infringer from then litigating the merits of these infringement assertions.

    In the Strafford teleconference, speakers Allen E. Hoover of Banner & Witcoff, Michael J. Sacksteder of Fenwick & West, and Michael L. Kiklis of Akin Gump Strauss Hauer & Feld will examine the Federal Circuit's first application of the Supreme Court's decision in MedImmune, discuss the impact of this decision on patent holders and licensees, and outline the best practices for IP asset owners in view of these latest developments in patent licensing law.  The speakers will also address questions such as:

    • What is the immediate impact of SanDisk for both patent holders and prospective licensees?
    • What clues does SanDisk give patent owners and licensees on the continuing development of patent law in the wake of MedImmune?
    • How does SanDisk alter how patent holders and licensees should approach patent licensing negotiations and agreements?
    • What are the important considerations for pursuing infringement accusations and for filing declaratory judgments?

    An interactive Q&A session will follow the speaker presentations.  The registration fee for this telephone conference ranges from $247 (for those registering before June 1) to $297 (for those registering after June 1).  A program outline for the teleconference can be obtained here.  Those interested in registering for the teleconference, can do so here, or by calling 800-926-7926 ext. 10.

  • Practising Law Institute (PLI) #1 Practising Law Institute (PLI) will be offering a webcast on the Supreme Court's decision in KSR Int'l Co. v. Teleflex, Inc. on June 13, 2007 from 1:00-2:00 PM (EST).  The webcast, entitled "The Scope and Implications of the Supreme Court's Ruling in KSR v. Teleflex on the Doctrine of Patent Obviousness," is the fourth installment in PLI's series of Patent Hot Topic Briefings.  Speakers James W. Dabney of Fried, Frank, Harris, Shriver & Jacobson LLP (counsel of record for KSR International), Thomas C. Goldstein of Akin Gump Strauss Hauer & Feld LLP (counsel of record for Teleflex), and moderator Douglas R. Nemec of Skadden, Arps, Slate, Meagher & Flom LLP will discuss the KSR decision and its implications on the prosecution of applications before the U.S. Patent and Trademark Office, on the litigation of patent cases (including the impact of the decision on summary judgment procedures), and in negotiations over potential patent licenses.  According to PLI, the speakers will also cover such issues as:

    • The Federal Circuit's anticipated reaction to KSR.
    • Additional obviousness issues that remain to be resolved.
    • The Supreme Court's approach to patent questions generally.

    The registration fee for this webcast is $299.  Those interested in registering for the webcast, can do so here.

  •     By Robert Dailey —

    Logo_arko_fr
    Norwegian biotech Natural ASA has settled its patent infringement suit against ArkoPharma involving conjugated linoleic acid (CLA), a dietary supplement thought to reduce body fat.  Natural markets its CLA product in the U.S. under the trademark Tonalin®.  (A month’s supply of Tonalin® gel capsules sells for about $25.)

    Logo
    Natural ASA is the exclusive licensee of two WARF-owned patents: U.S. Patent Nos. 5,554,646 and 5,814,663.  Both patents cover methods of using CLA to reduce and/or maintain body fat in humans.  ArkoPharma had begun selling CLA-containing dietary products in the U.S. without seeking a license from Natural ASA (or Natural’s downstream licensees).  Therefore, Natural filed suit last summer in federal district court in Madison, Wisconsin.  Under the settlement agreement, ArkoPharma will begin purchasing its CLA from Natural’s licensees (in addition to paying damages for past infringement).

    The settlement spells good news for those holding CLA patent portfolios.  The Tonalin® products have become a popular dietary supplement in the U.S. and Europe.  Natural’s dominance in this market is sure to continue.  Furthermore, this result should bode well for U.S.-based PharmaNutrients, which is planning to introduce a CLA formulation that reduces atheriosclerotic plaque.

    Additional information regarding the settlement can be found here and here.

    Robert Dailey, Ph.D., is a physical chemist and regular Patent Docs contributor.  Dr. Dailey, who recently completed his studies at the University of North Carolina School of Law and passed the patent registration exam, will be joining MBHB this fall.

  •     By Donald Zuhn

    Koronislogo
    Last month, Koronis Pharmaceuticals, Inc. announced that the United States Patent and Trademark Office had issued a Notice of Allowance for its application directed to Koronis’ lead HIV therapeutic candidate, KP-1461.  The patent that eventually issues from the allowed application will be the first U.S. patent to be awarded to the Redmond, Washington-based biotechnology company.

    A search of the USPTO Published Applications database and of Public PAIR indicates that the Notice of Allowance described in Koronis’ statement was issued for U.S. App. No. 10/226,799, which is entitled "Mutagenic Nucleoside Analogs for the Treatment of Viral Disease," and which was published on September 11, 2003 as U.S. Patent Application Publication No. 2003/0170872.  The Public PAIR record for this application shows that the Notice of Allowance was mailed on January 11, 2007.  Because the applicants filed a Petition to Revive on January 25, 2007, it is unclear when the patent will issue.

    According to the statement released by Koronis, the allowed claims relate to both the use and composition of KP-1461, a small molecule for oral administration that is currently being tested in clinical trials for the treatment of HIV infection.  In a process known as Viral Decay Acceleration (VDA), the novel compound has been shown in in vitro experiments to increase the virus’ naturally high mutation rate, with the accumulation of mutations throughout the viral genome ultimately exceeding an error threshold that leads to viral collapse.

    The ‘799 application claims the benefit of U.S. Provisional Application Nos. 60/314,728, filed August 24, 2001.  Representative independent claim 1 of the ‘799 application recites:

    Claim_1

  •  West LEGALworks West LEGALworks® will be rebroadcasting its webcast entitled: "KSR International Co. v. Teleflex, Inc.:
    Discover How the High Court's Ruling Will Alter the Patent Landscape"
    on May 31, 2007 from 1:00-2:30 PM (EST).  Speakers Thomas C. Goldstein of Akin Gump Strauss Hauer & Feld LLP
    (counsel of record for Teleflex), Robert Greene Sterne and Kenneth
    C. Bass, III of Sterne, Kessler, Goldstein & Fox P.L.L.C.
    (co-counsel for Teleflex), and moderator Jeffrey K. Sherwood of Akin Gump Strauss Hauer & Feld LLP will discuss how the KSR decision
    could alter the patent law landscape and make it harder for applicants
    to get new patents and defend existing ones, as well as how the
    decision fine-tunes the manner in which prior-art can be combined to
    render a claimed invention obvious.  According to Thomson-West, the
    speakers will provide a balanced perspective on what the Supreme Court
    ruling means for patent holders, patent applicants, and licensees, and
    cover such issues as:

    • What does the decision mean?
    • What does the decision mean for the relationship between the Federal Circuit and the Supreme Court?
    • What impact will the Court's decision have on inventors, businesses, corporations and innovation in the U.S.?
    • What questions has the Supreme Court left unanswered?
    • What can we expect from the USPTO during its transition period?
    • What impact will the KSR decision have on generic drug makers?
    • What are the implications of KSR on technology companies?
    • Will the number of patents filed drop off drastically?
    • Will KSR decision stifle innovation?
    • What kind of testimony will sway patent examiners?

    The registration fee for this webcast is $175.  Those interested in registering for the webcast, can do so here.  The webcast was originally presented on May 8, 2007.

  • Federal Circuit Increases Risk for Biotechnology Patent Prosecutors

        By Kevin E. Noonan

    In a decision that might not be noticed by most biotechnology patent prosecutors, McKesson Information Solutions, Inc. v. Bridge Medical, Inc., the Federal Circuit significantly increased the extent to which the duty of candor extends to activities occurring during prosecution of related applications.  At the same time, the Federal Circuit lowered the standard for deciding that activities during patent prosecution could be inferred to be intentional, making it easier for a patent to be found unenforceable due to inequitable conduct.  The effects of this decision are likely to be felt disproportionately by biotech patent applicants, in view of the high frequency with which applications in this technology area are required to file divisional and continuation applications.

    In McKesson, the activities found to constitute inequitable conduct occurred during prosecution of three related applications, two examined by one examiner (Traton) and a third by a different examiner (Lev).  (One important point is that this separately-examined application was not explicitly related by priority to either of the other two applications.)  The District Court found, and the Federal Circuit affirmed, inequitable conduct arising from the failure of the applicant’s representative to disclose three items of information deemed material to patentability.  The first was a prior art patent, cited by Examiner Lev in the third application, where the reference appears to contradict (or at least call into question) the applicant’s arguments in favor of patentability.  The reference disclosed what the Court characterized as a "three-node means of communication," and contrasted this purported disclosure with affirmative statements by patentee’s counsel to Examiner Traton in the prosecution of the first two applications that the prior art did not teach "three-node" communication means.  None of the grounds of rejection were based on anticipation under 35 U.S.C. § 102; rather, the issue was whether the combinations of the reference or information would have affected the Examiner’s view of the non-obviousness of the claims under examination.

    Both the District Court and the Federal Circuit focused on the purported disclosure in the Baker reference of "three-node" communication means and counsel’s assertions that the art did not teach the "three-node" means in support of its materiality determination.  Both Courts rejected the patentee’s assertions that the Baker reference was cumulative to other art of record, in part because Examiner Lev had added the Baker reference to the putatively cumulative art in making his obviousness rejection.  In addition, even though patentee’s counsel informed Examiner Traton of its third application being examined by Examiner Lev, counsel did not inform either examiner about the course of prosecution of any of the co-pending applications.  This was particularly striking in view of counsel making its "no three-node communication means" known in the prior art to Examiner Traton within 17 days of a telephone interview regarding the Baker reference with Examiner Lev; the Court stated that counsel "knew or should have known" of the materiality of the reference from Examiner Lev and thus counsel’s failure to disclose to Examiner Traton evinced an intent to deceive.  This inference was bolstered by counsel’s cancellation of claims before Examiner Lev in the face of the Baker reference where substantially similar claims were allowed by Examiner Traton.

    The second item of non-disclosed information was that counsel did not inform Examiner Traton about the grounds of rejection of substantially-similar claims pending before Examiner Lev.  Supporting the Court’s determination that this was material information was counsel’s behavior during prosecution, specifically cancelling claims before Examiner Lev in the face of the Baker reference that counsel permitted Examiner Traton to allow without benefit of reviewing the Baker reference.  The Court rejected counsel’s reliance on Federal Circuit precedent – specifically, Akron Polymer Container Corp. v. Exxel Container, Inc. (Fed. Cir. 1998) – that disclosure to Examiner Traton of the existence of the application being examined by Examiner Lev was sufficient to discharge counsel’s Rule 56 duty of disclosure.

    The third and final item of undisclosed material information was the allowance of one of the applications, where the possibility that the allowance might have provoked an obviousness-type double patenting rejection was the basis for determining the materiality of the allowance, citing Dayco Products, Inc. v. Total Containment, Inc. (Fed. Cir. 2003).  Here, counsel did not remind Examiner Traton that he had allowed the second, related continuation-in-part application prior to issuance of the original application as a patent, which oversight was enough to trigger unenforceability for inequitable conduct.  The Court mentioned the fact that the "entirety" of the specification of the earlier-filed parent application was contained in the continuation-in-part application in support of the purported likelihood of obviousness-type double patenting.  While this is a not-uncommon practice in preparing continuation-in-part applications, and the question of obviousness-type double patenting depends on the substance of the claims rather than the disclosure, the Federal Circuit here raised this similarity to greater significance in this case as evidence of an obviousness-type double patenting issue.

    The Federal Circuit singled out a number of practices by patentee’s counsel in support of its materiality determinations and inferences of intent underlying its finding of inequitable conduct.  For one thing, counsel submitted the same prior art references to both examiners, indicating to the Federal Circuit that the inventions claimed in the applications were very similar.  Curiously, however, the District Court used this coincidence to determine that the undisclosed reference "must have been pretty material," a conclusion that at best is not supported merely by its assertion:  the materiality of a reference should depend on the relationship between what the reference teaches and what is claimed, not whether other art has been cited in common between two applications.  Particularly damning, however, in both the District Court’s and the Federal Circuit’s eyes, was the position of the prosecuting attorney, that he would have done nothing differently having the benefit of hindsight.  Both Courts interpreted these assertions as evidence of an intent to deceive.

    The Federal Circuit (Judge Clevenger writing for the panel and joined by Judge Bryson) affirmed over Judge Newman’s dissent, basing its decision on substantial agreement with the District Court’s findings coupled with the patentee’s failure to show clear error in the District Court’s factual findings.  The majority agreed with the District Court that the Baker reference was highly material and not cumulative.  The Federal Circuit further stated that its precedent raised a duty to disclose more than just the existence of co-pending applications; grounds of rejection and art filed in one case must be communicated to an examiner in a second, related case.  Finally, the Federal Circuit affirmatively stated that patentee’s counsel "was not entitled to assume that Examiner Traton would recall his decision to grant the claims of the ‘372 patent when he was examining the ‘278 application in the absence of a written disclosure to that effect."

    Judge Newman dissented, although less strenuously than has been her wont on other matters.  She simply did not believe that the evidence presented below was sufficient to satisfy the requirements of Kingsdown Med. Consultants, Ltd. v. Hollister Inc., 863 F.2d 867 (Fed. Cir. 1988) (en banc) and Molins PLC v. Textron, Inc., 48 F.3d 1172 (Fed. Cir. 1995) concerning the quantum of proof required to support an inequitable conduct claim.  She further made the policy argument that the majority’s decision will encourage the "plague" of inequitable conduct charges in patent litigation that the Federal Circuit has descried almost since its installation.  See Burlington Indus., Inc. v. Dayco Corp., 849 F.2d 1418, 1422 (Fed. Cir. 1988) (stating that "the habit of charging inequitable conduct in almost every major patent case has become an absolute plague").

    The Federal Circuit’s decision in this case has several important (and perhaps dire) lessons for patent practitioners, especially those prosecuting biotechnology claims.  The requirement to submit art, even art considered to be cumulative, cited by an Examiner in one case during prosecution of a related case is unremarkable and is an illustration of sound prosecution strategy:  not only does submission reduce the possibility of a successful unenforceability defense, it increases the quantum of evidence required to show invalidity by clear and convincing evidence.

    The real mischief arises in the Federal Circuit’s affirmance of the principle that not only the existence but the course of prosecution of related applications should be disclosed to Examiners during prosecution.  The institution of the Patent Application Information Retrieval (PAIR) system makes it easier in practice to make note of developments in related cases.  However, the Federal Circuit’s decision is properly understood to impose the additional requirement that an applicant (or her counsel) take affirmative steps to bring such parallel prosecution to the attention of each examiner in related applications.  In view of the relatively larger number of divisional and continuation patent applications filed in support of biotechnology inventions, the burden and expense of this type of monitoring will be disproportionately borne by such applicants.

    Even more burdensome is the requirement that an applicant remind an examiner of actions taken by that same examiner in related applications, with the concomitant proscription against assuming that the Examiner is aware of the relationships between the applications, even when said relationships have been explicitly made on the record.  This kind of handholding by applicants of Examiners appears unrealistic and unnecessary, in view of the supposed presumption that an Examiner has done his or her job properly.  Announcing a new requirement that applicants take affirmative steps to ensure that Examiners are aware of their actions is incompatible with this presumption.

    Although the views of only one panel (and a divided one at that), this case should increase the patent bar’s apprehension regarding the Federal Circuit’s grasp of its role in bringing consistency to U.S. patent law, and its capacity to come to an agreement not only within particular panels but with its own precedent.  The inconsistency illustrated in the McKesson case can do nothing but make even more uncertain the value of U.S. patents, a result diametrically opposed to Congressional intent in establishing the Federal Circuit.

    McKesson Info. Solutions, Inc. v. Bridge Med., Inc. (Fed. Cir. 2007)
    Panel: Circuit Judge Newman, Senior Circuit Judge Clevenger, and Circuit Judge Bryson
    Opinion by Judge Clevenger
    Dissenting opinion by Judge Newman

    Additional information regarding this case can be found at Patently-O.

  • Managing Intellectual Property Managing Intellectual Property (MIP) will be offering a webcast entitled "Stating the Obvious: Patent Protection after KSR" on Wednesday, May 30, 2007 from 12:00-1:00 PM (EST).  Speakers James Nurton, Editor of MIP; John Dragseth and Katherine Lutton of Fish & Richardson P.C.; and Kevin H. Rhodes, Assistant Chief Intellectual Property Counsel of 3M will discuss the issues raised in the KSR case and the potentially fundamental changes that this decision may have on patent owners, litigants, the courts, and the U.S. Patent Office.  In particular, the panel will address the following topics:

    • Will the Court's rejection of the Federal Circuit's rigid test for obviousness make it easier to challenge patents?
    • Will it lead to litigation becoming less predictable?
    • Will it make it harder for applicants to get patents granted at the USPTO?

    Those interested in registering for the webcast can do so here.  The webcast is free of charge.

  • Celesq Celesq® AttorneysEd Center will be offering a webcast entitled "Supreme Court IP Roundup, the Court Asserts Itself: A Discussion of the Supreme Court Decisions in KSR International Co. v. Teleflex, Inc.; Microsoft Corp. v. AT&T Corp.; and MedImmune, Inc. v. Genentech, Inc." on Thursday, May 24, 2007 from 12:00-1:00 PM (EST).  Speaker Anthony F. Lo Cicero of Amster, Rothstein & Ebenstein LLP will discuss these three landmark Supreme Court decisions and the Court's reassertion over the Federal Circuit of its supremacy in patent cases.  Those interested in registering for the webcast can do so here.  The registration fee for the webcast is $60.