•     By Kevin E. Noonan

    In the face of increases in the numbers of medications available to treat ailments from the life-threatening to the annoying (or, in the case of Viagra®, embarrassing), the numbers of prescriptions taken per person, particularly the elderly, and the costs of these drugs, there is a concomitantly increased pressure to reduce the cost of prescription drugs.  These efforts can be seen on the local (e.g., Canadian drug importation laws in Maine and Illinois), federal (e.g., the pending biogenerics proposals in Congress), and international levels (e.g., Brasil’s compulsory licensing of anti-AIDS drugs; see "Not Getting It about Patented Drug Prices at The Wall Street Journal").  By the same logic that compels citizens (and their governments) to want increased services without increased taxes, the public clamors for low-cost, typically generic drugs, and politicians, non-governmental organizations (NGOs), and consumers blame the innovator drug companies for increased drug costs.  The solution, for many, is to be found in cheap generic drugs from any number of manufacturers, which companies have one thing increasingly in common:  the source of their drugs, whether the active pharmaceutical ingredient or the finished drug itself, comes from a foreign company, where its manufacturing plants are far from the watchful eye of the Food and Drug Administration (FDA).  Despite this, those same politicians, NGOs, and consumers take it on faith that they can rely on the FDA to oversee the safety and efficacy of generic drugs from these sources.  But they may be very wrong.

    The alarming lack of FDA oversight regarding foreign-produced drugs was the subject of a Washington Post story this Sunday by reporter Marc Kaufman.  The statistics in Mr. Kaufman’s story are chilling:  the FDA conducted a total of 200 plant inspections in Indian and Chinese drug companies selling or supplying drugs to the U.S. market over the past seven years.  In contrast, the agency conducted 1,222 quality-assurance inspections in U.S. drug manufacturing plants in the past year alone.  Moreover, even the agency admits that the kind of inspections conducted abroad are rarely as rigorous as those U.S. firms routinely undergo, and are always arranged in advance (unlike the "surprise" visits American drug companies are subject to).

    This is significant, because the confluence of greater political pressure from Western governments, medical insurance coverage providers and drugstores, and the explosive growth of native pharmaceutical industries in India and China since the development of the World Trade Organization regime, has greatly increased the number and types of drugs imported from abroad.  These include antidepressants, antibiotics, and heart medications, and they are arriving at unprecedented numbers:  almost 350 varieties of such drugs from India alone, and $675 million in finished drugs and active pharmaceutical ingredients (API) from China in the past year.  Up to 20% of finished generic drugs and over-the-counter medications, and 40% of the active drug ingredients used to make them, come from India and China according to the FDA.  These percentages may reach as high as 80% within 15 years, according to these officials.

    Thus, the situation is that foreign drug manufacturers, and their U.S. and Western partners, are introducing drugs into the American medical system with significantly less government quality control oversight than most Americans appreciate.  After all, the mantra at almost all chain and local pharmacies is that a generic is "just as good" as the branded variety, and at a significant cost savings.  Indeed, for some medicines there is no available non-generic form, since the innovator drug company has licensed the sale of "branded generics" to the generic manufacturer.  As a consequence, more than 60% of the prescriptions filled in the U.S. use generic rather than branded versions of the drugs.  These pressures will only increase if the trend started by WalMart to make available generic drugs for a set price (recently, $4) takes hold in the industry.

    These developments come at a time when the nation’s household pet owners have seen firsthand how lack of quality control can cause real damage.  The contamination of several popular brands of dog and cat food with melamine monomer resulted in pet deaths all other the country and a massive pet food recall.  The reason for the contamination was purely economic:  because total protein content is estimated by determination of the amount of nitrogen in a foodstuff, mixing nitrogen-containing melamine monomer as a contaminant raised the apparent protein content at a fraction of the cost of including actual protein.

    For pharmaceuticals, nothing so nefarious is needed to have an even more harmful effect.  Simply supplying drugs that have a shorter shelf-life, less active ingredient, or are otherwise contaminated could have Americans taking ineffective drugs that may not be identified even if the FDA were to test the drugs as they enter the country.  The nature of pharmaceutical agents is such that only by monitoring production facilities to ensure that the methods tested and approved by the FDA are being followed can the agency have a chance at keeping these "bad" drugs out of pharmacies and medicine cabinets in this country.

    The FDA is constrained by a limited budget that cannot accommodate a world-wide quality assurance regime funded by Washington.  For now, the FDA is relying on the pharmaceutical companies that partner with Indian and Chinese drug suppliers, and such companies actually do some quality assurance testing on the drugs they import.  However, this testing may not be effective, for the reasons mentioned above among others.  More importantly, such reliance is based on a hope that the Western drug company will undertake the burden of testing to avoid product liability lawsuits.  This reliance is misplaced for a number of reasons.  First, there are other avenues for such companies to take, such as bankruptcy, and as the pressures to produce lower-cost drugs increase, more and more companies may be willing to take the risk rather than incur the effect on their earnings, profitability, and attractiveness to Wall Street investors.  Second, it neglects to consider the effects of contrary government efforts to shield these same  companies from liability, such as the Bush Administration’s attempts to provide exclusion of liability for drug-related injuries incurred by taking an FDA-approved drug, or the phantom provisions of a Senate appropriations bill that would have shielded pharmaceutical companies from liability for thimerosal-related autism (should such a link ever be established).  Finally, it places the burden for pharmaceutical quality control on the public, making them in effect guinea pigs or coal-mine canaries for detecting adulterated drugs, and leaving any recovery for what could be serious, debilitating injury to the vagaries of the products liability system (which is under its own kind of assault from the "tort reform" crowd).

    There are many reasons for the costs of branded drugs, including development costs, regulatory costs, production costs, and costs incurred along the chain of commerce between the innovator drug company and the pharmacy that dispenses the drugs.  It is in the public’s best interests to be sure that these costs are based in a reality affected by the rest of the economy as a whole; the time is long past for the pharmaceutical equivalent of a robber baron (or an oil company).  However, these costs are real, and the generics’ capacity to undersell innovator companies is based, in part, on avoiding the development costs and regulatory costs borne by the innovator (and usually recompensed with market exclusivity due to patent protection for the drug).  However, although it can be expected that production costs will also be lower for generic drugs produced abroad, it must also be recognized that without strong FDA scrutiny the opportunity to "cut corners" is both real and financially attractive.  It is unlikely that anyone will get caught:  indeed, doctors cited in Mr. Kaufman’s article admitted that it was only after testing by German researchers revealed a "wide range in quality and effectiveness" in gentamicin, an antibiotic supplied by a Chinese company, that deaths in the 1990’s in patients treated with the drug were recognized as being "related to faulty manufacture" of the drug.  In the face of these kinds of pressures, and the unlikelihood that anyone responsible will ever need to take responsibility, it is irresponsible for the FDA, and the American government, to assume drugs provided from overseas generic companies are safe.  The next time we are confronted with the "branded or generic" choice at our pharmacy or doctor’s office, we are well advised to remember that when it comes to these generic drugs, Americans are more vulnerable today than any time since Upton Sinclair wrote "The Jungle."

  •     By Christopher P. Singer

    Roche
    In a June 19, 2007 press release, NimbleGen Systems Inc. announced that it and Roche have entered into a definitive acquisition agreement.  Under terms of the agreement Roche will pay $272.5 million to NimbleGen stockholders, and NimbleGen will become an integrated part of Roche Applied Science, a group that falls under its Diagnostics Division.  The deal is expected to close in the third quarter of 2007, pending regulatory clearance and the approval of NimbleGen shareholders.

    Nimblegen
    NimbleGen’s technology is focused in the area of high density DNA microarrays, which it manufactures using the company’s proprietary photochemical process technology, "Maskless Array Synthesis."  The acquisition enables Roche to add a complementary piece to genomic research tools, which currently include the LightCycler qPCR systems and high throughput Sequencing Systems from recently-acquired 454 Life Sciences.

    More information regarding the acquisition can be found in Roche’s press release.

  •     By Kevin E. Noonan

    Encode
    While Craig Venter is trying to synthesize a "minimal genetic complement" bacteria (see "Patent Life (Really)"),
    a consortium of 35 research groups from 80 research centers are
    attacking the problem from the other end of the phylogenetic tree:
    what is needed (minimally) to encode a human being?  Known as the ENCODE (ENCyclopedia Of DNA Elements) Project group, the consortium operates under the auspices, and with the financial support of, the National Human Genome Research Institute (NHGRI).  And in a National_human_genome_research_inst
    formal announcement of the publication of a synthesizing article in Nature and the concomitant publication of 83 separate supporting papers in the journal Genome Research,
    the latest results further distinguish the structure and complexity of
    the mammalian genome when compared to the more efficiently-designed
    bacterial genome.

    Cover_nature
    In its report ("Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project," Nature
    447:799-816), the ENCODE group presents results showing that a majority
    of the DNA sequences studied are transcribed into RNA, including both
    gene sequences and sequences understood to be non-coding – "junk" DNA –
    and that these primary transcripts are overlapping, i.e., they
    start and stop at a more diverse array of sites than previously
    appreciated.  Overlapping genes were detected in 224 loci, and 180 of
    these contained at least one exon from an upstream gene.  As the
    authors explain, "[i]nstead of the traditional view that many genes
    have one or more alternative transcripts that code for alternative
    proteins, our data suggest that a given gene may both encode multiple
    protein products and produce other transcripts that include sequences
    from both strands and from neighbouring loci (often without encoding a
    different protein)."  An illustrative example is a fusion transcript
    consisting of "at least" three coding exons from the ATP5O gene and two coding exons from the DONSON gene, expressed in small intestine.

    An important caveat to these results is that they are limited to a
    review of but 1% of the human genome (44 genomic region targets, 30
    million basepairs).  Within the studied sequences the authors did not
    find the kind of transcriptional distinctions between coding and
    non-coding DNA.  The authors found more than ten times the number of
    transcriptional "start" sites associated with regulatory sequences than
    genes known to reside in the target loci.  Moreover, there did not
    appear to be any differences in how evolutionarily conserved "gene"
    sequences were (compared with non-coding DNA) about 50% of the time,
    suggesting that evolution is operating not at the level of "conserved"
    genes but on interspersed elements, whose regulation-in-context (i.e.,
    within the surrounding non-coding DNA) was also the subject of
    evolutionary pressures.  Alternatively, the type of element-selection
    evolution could result in a plurality of alternative elements making up
    any particular portion of an encoded protein, and thus represent a
    "warehouse for natural selection."   

    These results have interesting consequences for protecting expressed
    sequence tag (EST) sequences, since if confirmed, they strike at the
    underlying rationales for the utility of such sequences.  Using the
    traditional paradigm of discrete "gene" sequences being the templates
    for transcription, the existence of an EST in a tissue, particularly
    the differential expression of a particular EST in a tissue, was
    assumed to be significant and reflect a cell, tissue, or organ-specific
    gene expression event.  If, on the other hand, there is a more general
    level of transcription, the assumption of utility ESTs have been imbued
    with is at best highly questionable.

    Human_genome_project_hgp
    These results also reinforce the message from sequencing the human genome by the Human Genome Project
    (HGP) at the turn of the century that we are at the beginning, not the
    end, of the road towards understanding how the decoded sequence
    information is organized and used by the cell.  This report, like
    others arising directly from the HGP, indicates that mammalian genomes
    are much more complex and depend more upon assortment, shuffling, and
    RNA tailoring (splicing, etc.) for mediating gene expression than occur
    in bacteria.  Indeed, the concepts of gene transcription elucidated
    over the past 40 years in lower organisms is likely to be seriously
    inadequate for understanding mammalian cell biology.  As a consequence,
    the paradigm shift is underway to accommodate the realities of
    mammalian cell biology reports such as the ENCODE report, and to adapt
    our thinking about mammalian gene expression and genome structure to
    conform to our DNA and not the other way around.

    ENCODE data can be accessed here.

  •     By Baltazar Gomez

    Cryolife_logo
    On June 14, 2007, CryoLife, Inc. of Kennesaw, Georgia announced the grant of U.S. Patent No. 7,226,615 directed to BioFoam®, a protein hydrogel foam for rapidly filling and sealing open wounds.  CyroLife’s BioFoam® can be used in sports medicine for rapidly closing open wounds and allowing athletes to continue playing almost immediately after injury.  BioFoam® may also be applicable in many life-saving situations where sealing wounds to prevent bleeding and infection is critical.  In fact, CryoLife has received funds from the U.S. Department of Defense, as part of its battlefield trauma program, for the development of protein hydrogels to limit blood loss in injured soldiers.

    Bg_dd
    CryoLife invented and developed BioFoam® as a hemostatic agent and tissue and organ sealant.  CryoLife is exploring the use of BioFoam® for vascular sealing and tissue augmentation.  BioFoam® contains an expansion agent to rapidly fill wounds when dispensed.  It is easily applied and could potentially be used intraoperatively to control internal organ hemorrhage, limit blood loss, reduce the need for future operations, as well as to seal open wounds to improve outcomes in penetrating abdominal and chest injury.  BioFoam® is based on the same technology platform of CryoLife’s BioGlue® Surgical Adhesive approved by the FDA to control bleeding as an adjunct to sutures and staples in open surgical repair of large vessels.  BioGlue® is also CE marked in the European Community and approved in Canada and Australia.

    000089256905000485_a10565a1056505
    CryoLife and Endologix, Inc. signed a development and marketing agreement for the percutaneous or endovascular delivery of BioFoam® as a self-expanding sealant for endovascular aortic aneurysm grafts.  Under the agreement, Endologix will be responsible for preclinical, clinical, and regulatory activities and costs, and CryoLife will manufacture BioFoam® for clinical use and commercial sale and receive a royalty on potential future product sales.

    The ‘615 patent, entitled "Expandable Foam-Like Biomaterials and Methods," issued from U.S. Application No. 09/986,124, filed on November 7, 2001, and claims the benefit of U.S. Provisional Application No. 60/246,063, filed on November 7, 2000.  The ‘615 patent covers liquid, injectable, aqueous solutions that are transformed in situ to an expandable foam-like, space filling, and adherent biomaterials.  In particular, the foam-like biomaterial is the reaction product of a two-part liquid system that comprises a protein solution and a cross-linker solution.  For example, the expandable foam-like biomaterial comprises a reaction product of human or animal-derived protein and a di- or polyaldehyde in the presence of a bicarbonate and an acidic titrant to impart a cellular foam structure to the material.  Representative independent claims 1 and 12 of the ‘615 patent are listed below.

    Claim 1.  A kit for forming a solid cellular foam proteinaceous biopolymeric material comprising separate reactable aliquot portions consisting of a first aqueous solution containing a proteinaceous material, and a second aqueous solution which is reactable with, the proteinaceous component of the first aqueous solution to form a solid proteinaceous biopolymeric material in response to mixing of said first and second aqueous solutions, wherein the first aqueous solution includes a blowing agent, and wherein said second aqueous solution includes an acidic titrant reactable on contact with the blowing agent sufficient to evolve a gas to impart a cellular foam structure to the proteinaceous biopolymeric material concurrently while said proteinaceous material of said first aqueous solution reacts with said second aqueous solution to form said solid proteinaceous biopolymeric material.

    Claim 12.  A kit for forming a solid cellular foam proteinaceous biopolymeric material comprising separate reactable aliquot portions consisting of a first aqueous solution containing bovine or human serum albumin, and a second aqueous solution containing a di- or polyaldehyde which is reactable with the bovine or human serum albumin of the first aqueous solution to form a solid proteinaceous biopolymeric material in response to mixing of said first and second aqueous solutions, wherein one of the first and second aqueous solutions includes a blowing agent, and wherein the other of said first and second aqueous solutions includes an acidic titrant reactable on contact with the blowing agent sufficient to evolve a gas to impart a cellular foam structure to the proteinaceous biopolymeric material concurrently while said bovine or human serum albumin of said first aqueous solution reacts with said di- or polyaldehyde of said second aqueous solution to form said solid proteinaceous biopolymeric material.

  •     By Sherri Oslick

    Gavel About
    Court Report:  Each week we will report briefly on recently filed
    biotech and pharma cases, and a few interesting cases will be selected
    for periodic monitoring.


    Sanofi-Aventis U.S. LLC et. al. v. Sandoz, Inc.

    3:07-cv-02762; filed June 14, 2007 in the District Court of New Jersey

    Infringement of U.S. Patent Nos. 5,338,874 ("Cis oxalato (trans 1-1,2-cyclohexanediamine) PT(II) Having Optically High Purity," issued August 16, 1994) and 5,716,988 ("Pharmaceutically Stable Preparation of Oxaliplatinum," issued February 10, 1998) following a paragraph IV certification as part of Sandoz's filing of an ANDA to manufacture a generic version of plaintiffs' Eloxatin® (oxaliplatin for injection, used to treat colorectal cancer).  View the complaint here.

  • Calendar June 21-22, 2007 – Technology IP Due Diligence Conference (American Conference Institute) – San Francisco, CA***

    June 21-22, 2007 – Pharma/Biotech Patent Boot Camp (American Conference Institute) – New York, NY***

    June 26-28, 2007 – Euro-Biotech Forum 2007 – Paris, France

    June 28, 2007 – "Patent Licensing Post MedImmune: Proceed with Caution: Best Practices for Adapting to Sweeping Change in Licensing" (Strafford CLE Teleconferences)

    July 12-14, 2007 – Intellectual Property Law Summer Institute (Institute of Continuing Legal Education) – Mackinac Island, Michigan

    July 16-17, 2007 – Pharma and Biotech Collaborative Agreements Conference (American Conference Institute) – San Francisco, CA***

    ***Patent Docs is a media sponsor of this conference or CLE.

  •     By Kevin E. Noonan

    Im0025
    More important (and perhaps even more sought after) than the alchemist’s Philosopher’s Stone have been the efforts over the past several years to find a substitute for embryonic stem (ES) cells.  In view of ethical considerations and the Bush Administration’s religion-based (and politically-motivated) restrictions on federal funding for human ES cell research, researchers have attempted, with varying degrees of success (see "Limitations on the Usefulness of Adult Stem Cells"), to use stem cells isolated from adult tissues, as well as placentally-derived hematopoietic stem cells instead of human ES derived from embryos (most of which are slated for destruction as an unused consequence of in vitro fertilization efforts).  Although the full scope of the utility and potential of human ES cells has yet to be established, it is generally recognized that until now these cells possess developmental properties and potentialities different from (more robust and versatile) adult stem cells.  Additional concerns involve isolating a sufficient number of stem cells for regenerative medicine even if a change of administration in Washington in 20 months leads to a change in the current policies.

    Gould_lecture
    Reports this week suggest a new alternative:  genetically-engineered fibroblasts having increased developmental potential.  One report, from a group including Dr. Rudolf Jaenisch (at left) at the Massachusetts Institute of Technology and its related research organizations, the Whitehead Institute and the Broad Institute (a joint effort between MIT and Harvard), was published on June 6th on the Nature website (Wernig et al., 2007, "In vitro reprogramming of fibroblasts into a pluripotent ES-cell-like state").  In this report, Jaenisch and co-workers showed that adult mouse fibroblasts (the precursor cells to connective tissue) could be "reprogrammed" to have increased developmental potency.  This reprogramming involved introducing into these cells and ectopically expressing four transcription factors:  OCT4 (also known as OCT3/4 or POU5F1), SOX2, C-MYC, and KLF4.  Cells produced by nuclear somatic introduction of these genes into fibroblast cells were found to have methylation patterns, chromatin configurations, and gene expression patterns characteristic of human ES cells.  Functionally, the cells could be used to form viable chimeras (embryos created classically by fusion of different zygotes; see papers by Clement Markert from the 1980’s), can generate late-term embryos and can contribute to the germ line in mice produced using them.  The authors characterize the attributes as being "indistinguishable" from ES cells.

    This work fulfilled earlier studies by a Japanese group (Takahashi et al., 2006, "Induction of pluripotent stem cells from mouse embryonic and adult fibroblast cultures by defined factors") that achieved expression of these four transcription factors in fibroblasts but could not be shown to be functionally-equivalent to ES cells.  The Jaenisch group used a different selection criteria to produce its reprogrammed fibroblasts, by selecting cells having induced expression of the endogenous Oct4 gene through homologous recombination and selection with a drug marker gene, followed by infection with retroviral vectors encoding each of the four transcription factors.  The reprogrammed fibroblasts having reactivated endogenous Oct4 or Nanog genes (linked by homologous recombination to the bacterial neo gene) were epigenetically identical to ES cells by several important criteria, and generated viable chimeras and late-gestation embryos after injection into tetraploid blastocysts.

    Such reprogrammed pluripotent stem cells have an advantage over ES cells in their capacity to be "customized" to an individual patient, since they could in theory be developed from the individual’s own fibroblasts.  These reprogrammed cells also were able to grow independently of feeder cells, and expressed normal OCT4, NANOG, and SOX2 RNA and protein levels.  Importantly, although the reprogramming appeared to be triggered by expression of the exogenous transcription factors under control of the retroviral long terminal repeats (LTRs), maintenance of the pluripotent state was the result of expression of the endogenous transcription factor genes, particularly Oct4.  In fact, methylation patterns of the retroviral promoter sequences indicated that these sequences were transcriptionally silenced in the reprogrammed cells.  This is important for translation of these results from mouse to human cells, since it is known that inappropriate, retroviral LTR-mediated expression can cause (or at least increase the risk of) malignancy.  Indeed, the authors identify their use of retroviral-mediated vectors as a major impediment to applying these methods to human cells.

    In another report from the Yamanaka group (Okita et al., 2007, "Generation of germline-competent induced pluripotent stem cells") – responsible for the first demonstration for reprogramming fibroblasts using exogenously-introduced transcription factors – similar results were obtained.  However, this group targeted endogenous Nanog gene expression, rather than Oct4 expression in the reprogrammed fibroblasts, but showed increased ES cell-like gene expression and methylation patterns.  These cells also differed from their previously-reported reprogrammed cells by being competent to make chimeras.  Unlike the Jaenisch group’s results, however, the chimeras obtained in these studies showed a high (20%) incidence of tumors that the authors attributed to activation of the c-myc transgene.

    Yet another demonstration of this reprogramming was reported in the inaugural issue of Cell Stem Cell by Dr. Konrad Hochedlinger from the Massachusetts General Hospital Center for Regenerative Medicine and the Harvard Stem Cell Institute, Dr. Kathrin Plath from the Institute for Stem Cell Biology and Medicine at UCLA, and their colleagues (Maherall et al., 2007, "Directly reprogrammed fibroblasts show global epigenetic remodeling and widespread tissue contribution").  This report contained as additional evidence reactivation of the X chromosome in female-induced stem cells (that was silenced in differentiated cells), as well as random X inactivation upon redifferentiation.

    Once more, the inexorable advance of technology may outpace attempts by policy-makers and politicians to direct the developmental course of stem cell science.  It is gratifying that this work was done in the U.S., in the face of the several obstacles imposed by federal funding limitations, but it must be acknowledged that these advances were achieved using mouse cells rather than human cells.  It is certainly likely that the experimental flexibility of the mouse ES model would have directed the course of this research through the mouse intermediate in any event.  But it is certainly the case that efforts by several states, including California and (relevant to the Jaenisch group) Massachusetts will be necessary to provide the financial support (and incentives) for further development of a technology that could avoid many of the troublesome ethical challenges facing use of human embryos to produce ES cells.

    For additional information on this and related topics, please see:

  •     By Christopher P. Singer

    Uspto_seal
    As previously reported on Patent Docs, the biotechnology, chemical, and pharmaceuticals technology groups at the U.S. Patent Office held their quarterly customer partnership meeting on June 13, 2007.  While the stated purpose of the meeting was merely to encourage dialog between practitioners, patent applicants, and the Office (i.e., not to announce PTO policy), the discussions did provide a helpful insight as to how these Art Units approach certain issues. 

    One discussion focused on enablement issues under 35 U.S.C. § 112 as applied to the examination of claims relating to antibodies.  Larry R. Helms, Supervisory Patent Examiner for Art Unit 1643 presented a discussion of common enablement issues that Examiners encounter during examination of antibody inventions.  After providing some general background discussion on antibody technology, Mr. Helms presented examples of three types of antibody claims and typical reasoning as to why each claim was enabled or not enabled, given particular disclosure in the specification, and the state of the prior art (typically referenced to around the late 80’s to early 90’s).

    1st Example: 

    Claim 1:  An isolated antibody that binds to human antigen X, said antibody comprises a heavy chain variable domain comprising the 3 CDRs in SEQ ID NO:1 and a light chain variable domain comprising the 3 CDRs in SEQ ID NO:2.

    This claim would be ENABLED when the specification discloses:

    (a)  antigen X from human tissue;
    (b)  antigen X is over-expressed in, e.g., cancer cells, compared to normal cells;
    (c)  an antibody that binds antigen X and contains SEQ ID NOs:1 and 2;
    (d)  explicit disclosure of humanized and chimeric antibodies; and
    (e)  examples of detection of cancer in human subjects with an antibody that binds antigen X.

    2nd Example: 

    Claim 1:  An isolated antibody that binds to human antigen X, said antibody comprises a heavy chain variable domain comprising SEQ ID NO:1.

    Claim 2:  An isolated antibody that binds to human antigen X, said antibody comprises a light chain variable domain comprising SEQ ID NO:2.

    These claims would be ENABLED when the disclosure contains the same information noted for Example 1 above.

    3rd Example:

    Claim 1:  An isolated antibody that binds to human antigen X, said antibody comprises a heavy chain variable domain and a light chain variable domain, said heavy chain variable domain comprises the CDR3 in SEQ ID NO:1.

    This claim would NOT be ENABLED when the specification discloses:

    (a)  a series of antibodies with specific pairing (i.e., non-random) of VH and VL domains, that bind antigen X;
    (b)  the VH domains are highly homologous to each other and share identity over a large portion of the other CDR and framework regions;
    (c)  the VL sequences are highly homologous to each other in the framework and CDR regions;
    (d)  a suggestion that it was well established in the art at the time of the invention that the CDR3 region alone can determine the specificity of an antibody.

    Mr. Helms’ rationale behind the last example is that the prior art methods (ca. late 90’s early 2000’s) fail to generate antibodies by retaining solely the CDR3 region of the VH domain and randomizing the remainder for the VH and VL sequences.  He also characterized the art as indicating that, while important, CDR3 is not solely responsible for antigen binding, as a number of references describe that all six CDR regions (and sometimes framework regions) provide important contacts with the antigen.  Thus, the full scope of the claim in Example 3 is not enabled.  Therefore, if an applicant wishes to pursue claims similar to those in Example 3 above, it seems that in order to meet the enablement requirement the applicant will need to present data to the Office, either in the form of examples in the specification or through 132 declarations, that demonstrate that CDR3 (or another portion of the VH or VL sequence) can confer antigen specificity to a randomized sequence.

    Note to Readers:  This is the first in a series of articles regarding selected presentations from the June 13, 2007 quarterly biotechnology/chemical/pharmaceuticals customer partnership meeting.  The second article in the series is entitled "Restriction Practice For Product Inventions in The Biotech, Chemical & Pharma Arts."

  •     By Donald Zuhn

    Supreme_court_building_1
    On Monday, the U.S. Supreme Court denied a motion to expedite consideration of a petition for a writ of certiorari filed by Pfizer Inc. in Pfizer Inc. v. Apotex, Inc. (2007).  The Chief Justice took no part in the consideration or decision of Pfizer’s motion.

    Pfizer
    As previously reported by Patent Docs, on March 22, 2007 the Federal Circuit reversed a District Court finding of validity with respect to U.S. Patent No. 4,879,303, holding that the ‘303 patent was rendered obvious by, inter alia, U.S. Patent No. 4,572,909 and Berge, 1977, "Pharmaceutical Salts," J. Pharm. Sci. 66:1-19.  Pfizer’s ‘303 patent relates to amlodipine besylate (sold by Pfizer under the trademark Norvasc®), an acid addition salt of amlodipine that does not exhibit the instability and stickiness in tablet form of amlodipine maleate (an acid addition salt of amlodipine disclosed in Pfizer’s ‘909 patent).

    At trial, the District Court had determined that amlodipine besylate was nonobvious, concluding that "[t]here is no reliable way of predicting the influence of a particular salt species on the behavior of a parent compound," and further, that amlodipine besylate "clearly and unexpectedly illustrates a superior combination of properties when compared to [amlodipine maleate]."  However, on appeal, a panel consisting of Chief Judge Michel and Judges Mayer and Linn reversed, stating that "[a]t most . . . Pfizer engaged in routine, verification testing to optimize selection of one of several known and clearly suggested pharmaceutically-acceptable salts to ease its commercial manufacturing and marketing of the tablet form of the therapeutic amlodipine."

    As also reported by Patent Docs, on May 21, 2007 the Federal Circuit denied a combined petition for panel rehearing and rehearing en banc filed by Pfizer.  Following the denial of its combined petition, Pfizer appealed the Federal Circuit’s determination to the Supreme Court, filing a petition for writ of certiorari and a motion to expedite consideration of the petition for a writ of certiorari on May 30, 2007.

    Apotex
    As reported on IP LAW360, Robert Breisblatt of Welsh & Katz Ltd. (counsel for Apotex) explained that the Supreme Court’s denial likely means that the case will not be heard until the fall term, as the Court’s current term ends in June and Apotex’ response is not due until June 29, 2007 (see docket for Case No. 06-1582).

    Neither Pfizer nor Apotex released a statement regarding the denial of Pfizer’s motion to expedite.

  •     By Donald Zuhn

    Committee_room
    As recently reported on Patent Docs, the Senate Judiciary Committee conducted a hearing last week on patent reform.  According to reports earlier today (June 12, 2007) at internetnews.com and InfoWorld, five Republican members of the Senate Judiciary Committee are now seeking to delay the Senate bill’s progress, saying the controversial measure of patent reform deserves additional hearings.  The Senators sent a letter expressing their views to Senate Judiciary Committee Chairman Senator Patrick Leahy and Ranking Member Senator Arlen Specter on Monday.

    The Senators calling for more time to "work through certain issues" regarding the patent reform bill include:  Tom Coburn of Oklahoma, Jeff Sessions of Alabama, Chuck Grassley of Iowa, Jon Kyl of Arizona, and Sam Brownback of Kansas.  According to internetnews.com, only Senator Coburn attended last week’s hearing – one of two patent reform hearings Senator Coburn has attended since 2005 – while the remaining Senators signing the letter had missed all seven of the Committee’s patent reform hearings held since 2005.