• By Kevin E. Noonan –

    Federal Circuit SealThe importance of claim construction, and how construing the same term facing a challenge based on different prior art in separate inter partes review proceedings can result in contrary findings on invalidity, was illustrated by the Federal Circuit's decision recently in Pacific Biosciences of California, Inc. v. Personal Genomics Taiwan, Inc.

    The case arose in Pacific Bioscience's IPR challenges to different combinations of claims* of U.S. Patent No. 7,767,441, owned by Personal Genomics Taiwan (PGI).  Claim 1, challenged in both IPRs, is representative:

    1.  An apparatus for identifying a single biomolecule, comprising:
        a substrate having a light detector; and
        a linker site formed over the light detector, the linker site being treated to affix the biomolecule to the linker site;
        wherein the linker site is proximate to the light detector and is spaced apart from the light detector by a distance of less than or equal to 100 micrometers.

    The two instituted IPRs were directed to claims 1, 2, 6, 7, 10–22, 24, and 27–36 ("the '1200 IPR") and claims 1–6, 9, and 43–58 ("the '1163 IPR").  Pacific Biosciences (PacBio) asserted U.S. Patent Application Publication No. 2004/0197793 A1 in the '1200 IPR, on anticipation and obviousness grounds, and International Publication No. WO 2007/045755 A1 in the '1163 IPR, also asserting anticipation or obviousness against the challenged claims.  The Board held in separate Final Written Decisions that PacBio failed to establish invalidity of the challenged claims in the '1200 IPR on either ground, but that the claims challenged in the '1163 IPR were invalid as being anticipated by the '755 published PCT application.  (The opinion notes that the FWD in the '1163 IPR also found invalidity on obviousness grounds that was not at issue in the appeal assessed below.)  As discussed in the Federal Circuit's opinion, both these determinations relied on the Board's construction of the term "identifying a single biomolecule" to have its plain and ordinary meaning encompassing identification of a single molecule and not multiple copies of the same molecule.  This appeal followed by each of the losing parties on each of the IPRs.

    The Federal Circuit affirmed the Board's determinations in each IPR, in an opinion by Judge Taranto, joined by Judges Prost and Hughes.  The opinion first addresses the Board's construction of the phrase "identifying a single biomolecule," which was given its plain and ordinary meaning of identifying a single biomolecule and not an amplified or multiplicity of the same biomolecule, or as stated in the opinion "requiring an apparatus capable of ascertaining the identity of one single, individual biomolecule by examining only that biomolecule."  The panel held that the plain and ordinary meaning, both on its face and in the context of the claims and specification supported the Board's construction that as a feature of the claimed apparatus the language recites "(a) ascertaining the identity of a biomolecule, i.e., what that biomolecule is, and (b) doing so by examining just that one biomolecule, not others (even copies)."  The Federal Circuit, reviewing the Board's construction without deference (because it was based solely on intrinsic evidence), nevertheless resorted to two dictionary definitions of "identify" to affirm the Board's construction with regard to the first portion of the definition, and the panel relied on the context of the claim to decide conformity with the second portion.  The "striking feature" the court stated that provided this context was the word "single," the panel stating that "[t]here is no apparent reason for the inclusion of the word 'single' in the phrase except to indicate that the capability required is to identify a molecule with just that one molecule in view."  The Federal Circuit was also persuaded by statements in the specification that the capability to identify singe biomolecules was "critical" to the invention, and that the "single molecule" feature avoided recognized problems in detecting "a population-level signal from an ensemble or cluster of amplified or copied biomolecules."  Finally, regarding claim construction the opinion uses comparisons with the language in other claims in the '441 patent that related to detecting more than one biomolecule to limit claim 1 to identifying a single biomolecule.

    Turning to the Board's factual predicates for its decisions on validity (challenged by both appellants), the panel held that the Board's conclusions in each case were supported by substantial evidence.  For the '1200 IPR, the "principal embodiment" disclosed in the cited art was using an assay having a sensitivity that permitted detection of biomolecules in amounts "as low as 0.1 attomoles."  This corresponds to detecting more than 60,000 molecules (according to PacBio's expert), and other portions of the prior art reference recited even higher amounts ("1 amol to 100 amol").  "This evidence," according to the opinion, "provides substantial-evidence support for the Board's finding that [the asserted prior art] does not disclose 'identifying a single biomolecule.'"  For the '1163 IPR, the "critical disclosure" was the capacity of the prior art apparatus to include openings in the detector sufficiently small to detect "individual chromophores" (emphasis in opinion).  In the Court's opinion, this disclosure provided substantial evidence supporting the Board's determination that the prior art was capable of detecting a single biomolecule, because such biomolecules were typically tagged with a single chromophore.  The panel found that the Board had sufficient basis for rejecting a contrary opinion from PGI's expert (that the sensitivity of the prior art detector was no less than 78 biomolecules) that included rebuttal evidence from PacBio that the disclosed improvement in detection provided by the cited prior art ("a factor of 400") could result in a sensitivity improvement permitted single biomolecule detection.  While the panel recognized that PacBio's expert asserted a lower estimate of improved sensitivity ("30 or 40 or 50 times better"), "[w]here the overall evidence reasonably allows the Board's factual finding on a point, we do not 'reweigh the evidence' to reject that finding," citing Regents of the University of California v. Broad Institute, Inc., 903 F.3d 1286, 1294 (Fed. Cir. 2018).  Accordingly, the Federal Circuit affirmed the Board's decisions in these IPRs.

    Pacific Biosciences of California, Inc. v. Personal Genomics Taiwan, Inc. (Fed. Cir. 2024)
    Panel: Circuit Judges Prost, Taranto, and Hughes
    Opinion by Circuit Judge Taranto

    * The challenged claims of the '441 patent:

    '1200 IPR

    '1163 IPR

    1. An apparatus for identifying a single biomolecule, comprising:

    a substrate having a light detector; and

    a linker site formed over the light detector, the linker site being treated to affix the biomolecule to the linker site;

    wherein the linker site is proximate to the light detector and is spaced apart from the light detector by a distance of less than or equal to 100 micrometers.

    2. The apparatus of claim 1, further comprising a blind sheet formed over the substrate, the blind sheet including a pinhole having a diameter, wherein the linker site is formed proximate to the pinhole.

    6. The apparatus of claim 2, further comprising a microlens formed between the substrate and the blind sheet.

    7. The apparatus of claim 1, wherein the distance is less than or equal to 25 micrometers.

    10. An optical detection system, comprising at least 10,000 apparatuses as recited in claim 1.

    11. A method of sequencing a plurality of nucleic acid molecules, the method comprising the steps of:

    affixing a plurality of nucleic acid molecules to the linker sites of the optical detection system of claim 10; and

    performing nucleic acid sequencing of the nucleic acid molecules in parallel on the optical detection system.

    12. A method of detecting a plurality of biomolecules, the method comprising the steps of:

    affixing a plurality of biomolecules to the linker sites of the optical detection system of claim 10; and

    detecting the biomolecules on the optical detection system in parallel.

    13. An optical detection system, comprising at least 250,000 apparatuses as recited in claim 1.

    14. An optical detection system, comprising at least 2,000,000 apparatuses as recited in claim 1.

    15. An optical detection system, comprising at least 10,000,000 apparatuses as recited in claim 1.

    16. A method of sequencing a nucleic acid, comprising the steps of:

    affixing one nucleic acid molecule to the linker site of the apparatus of claim 1; and

    performing nucleic acid sequencing of the nucleic acid molecule on the apparatus.

    17. The method of claim 16, wherein the nucleic acid is affixed to the linker site by binding to a polymerase molecule affixed to the linker site.

    18. The method of claim 16, wherein the nucleic acid sequencing comprises the step of adding labeled nucleotides to the apparatus.

    19. The method of claim 18, wherein the nucleotides are labeled fluorescently.

    20. The method of claim 19, wherein the nucleotides are labeled fluorescently on their terminal phosphate.

    21. The method of claim 16, wherein the nucleic acid sequencing is base extension sequencing and includes the step of adding blocked and labeled nucleotides to the apparatus.

    22. The method of claim 21, wherein the nucleotides are labeled fluorescently.

    24. The method of claim 22, wherein the nucleotides have distinct fluorescent labels and are added simultaneously.

    27. The method of claim 16, wherein the sequence of the nucleic acid is unknown.

    28. The method of claim 16, wherein the nucleic acid is detected with a label excited by Förster resonance energy transfer (FRET).

    29. The method of claim 16, wherein the nucleic acid is detected with a label by time-resolved fluorescence technology.

    30. A method of detecting a biomolecule, comprising the steps of:

    affixing one or more biomolecule to the linker site of the apparatus of claim 1; and

    detecting the biomolecule on the apparatus.

    31. The method of claim 30, wherein the biomolecule comprises a label.

    32. The method of claim 31, wherein the label is fluorescent.

    33. The method of claim 32, wherein the biomolecule comprises a moiety chosen from a polypeptide, antibody, lipid, vitamin, low molecular weight organic molecule, and polysaccharide.

    34. The method of claim 33, wherein the biomolecule is affixed to the linker site of the apparatus by a linking molecule.

    35. The method of claim 34, wherein the linking molecule comprises a capture molecule.

    36. The method of claim 35, wherein the capture molecule is a protein.

    1. An apparatus for identifying a single biomolecule, comprising:

    a substrate having a light detector; and

    a linker site formed over the light detector, the linker site being treated to affix the biomolecule to the linker site;

    wherein the linker site is proximate to the light detector and is spaced apart from the light detector by a distance of less than or equal to 100 micrometers.

    2. The apparatus of claim 1, further comprising a blind sheet formed over the substrate, the blind sheet including a pinhole having a diameter, wherein the linker site is formed proximate to the pinhole.

    3. The apparatus of claim 2, wherein the pinhole has a diameter of less than or equal to 1,000 nanometers.

    4. The apparatus of claim 2, wherein the pinhole has a diameter of less than or equal to 200 nanometers.

    5. The apparatus of claim 2, further comprising a filter layer formed between the substrate and the blind sheet.

    6. The apparatus of claim 2, further comprising a microlens formed between the substrate and the blind sheet.

    9. The apparatus of claim 1, wherein the light detector collects light from the biomolecule within a solid angle, the solid angle being greater than or equal to 0.8 SI steridian.

    43. A method of providing biomolecule analysis service, comprising the steps of:

    providing a sample comprising a biomolecule from a service requester to a service provider;

    the service requester receiving analytical results from the service provider, wherein the results are produced using the apparatus of claim 1.

    44. The method of claim 43, wherein the method is performed for remunerative consideration.

    45. The method of claim 44, wherein the service requester and the service provider are mediated by a vendor.

    46. The method of claim 43, wherein the analytical results are produced in another country.

    47. The method of claim 43, wherein the analytical results are produced in a country other than the United States of America.

    48. An apparatus for identifying a single biomolecule, comprising:

    a substrate having a light detector;

    a linker site formed over the light detector, the linker site being treated to affix the biomolecule to the linker site; and

    an excitation light source formed over the substrate;

    wherein the linker site is proximate to the light detector and is spaced apart from the light detector by a distance of less than or equal to 100 micrometers.

    49. The apparatus of claim 48, wherein the excitation light source includes a light emitting layer, the light emitting layer emitting excitation light to the linker site along a horizontal direction parallel to a surface of the light detector.

    50. The apparatus of claim 49, further comprising a filter layer formed between the substrate and the light emitting layer.

    51. The apparatus of claim 48, wherein the excitation light source is chosen from a light emitting diode (LED), an organic light emitting diode (OLED), a polymer light emitting diode (PLED), and a laser diode (LD).

    52. The apparatus of claim 48, wherein the excitation light source provides excitation light of a first wavelength range not overlapping with a second wavelength range of light emitted from the biomolecule.

    53. An apparatus for identifying a single biomolecule, comprising:

    a substrate having a light detector; and

    a linker site formed over the light detector, the linker site being treated to affix the biomolecule to the linker site;

    wherein the light detector collects light emitted from the biomolecule within a solid angle of greater than or equal to 0.8 SI steridian.

    54. An apparatus for identifying a single biomolecule, comprising:

    a substrate having a light detector;

    a linker site formed over the light detector, the linker site being treated to affix the biomolecule to it; and

    an excitation light source formed over the substrate;

    wherein the light detector collects light emitted from the biomolecule within a solid angle of greater than or equal to 0.8 SI steridian.

    55. A method for manufacturing an apparatus for identifying a single biomolecule, comprising:

    forming a light detector and a control circuit on a substrate;

    forming a blind sheet having a pinhole over the substrate; and

    forming a linker site over the light detector and proximate to the pinhole, the linker site being treated to affix the biomolecule to the linker site, wherein the linker site is proximate to the light detector and is spaced apart from the light detector by a distance of less than or equal to 100 micrometers.

    56. The method of claim 55, further comprising forming a filter layer between the substrate and the blind sheet.

    57. The method of claim 56, wherein forming the blind sheet comprises:

    forming an opaque layer on the filter layer;

    forming a photoresist layer on the opaque layer;

    patterning the photoresist layer to expose a portion of the opaque layer;

    etching the opaque layer using the patterned photoresist layer as a mask until the filter layer is exposed; and

    removing the photoresist layer.

    58. The method of claim 57, wherein the opaque layer comprises metal.

  • MBHB Logo 2McDonnell Boehnen Hulbert & Berghoff LLP will be offering a live webinar on the "Top Patent Law Stories of 2023" on January 23, 2024 from 10:00 am to 11:15 am (CT).  Since 2007, the Patent Docs weblog has presented an annual, end-of-the-year review of the top stories in patent law.  In this presentation, Patent Docs co-authors Donald Zuhn, Kevin Noonan, and Michael Borella will take a look back at the top patent stories of 2023, many of which will likely impact patent applicants and practitioners in the coming year.

    While there is no fee to participate, attendees must register in advance.  Those wishing to register can do so here.  CLE credit is pending for the states of California, Illinois, New Jersey, New York, North Carolina, and Virginia.

  • IPO #2The Intellectual Property Owners Association (IPO) will offer a one-hour webinar entitled "2023 PTAB Year in Review," on January 16, 2024 from 1:00 pm to 2:00 pm (ET).  Sendil Devadas of Corteva Agriscience; Joshua Goldberg of Finnegan, Henderson, Farabow, Garrett & Dunner, LLP; and Kassandra Officer of Finnegan, Henderson, Farabow, Garrett & Dunner, LLP will discuss some of the most significant developments in PTAB practice in 2023 and how those developments will impact future cases, and discuss important decisions promulgated last year, including several designated precedential, as well as court treatment of PTAB decisions with implications for PTAB practice.

    The registration fee for the webinar is $150 for non-members or free for IPO members (government and academic rates are available upon request).  Those interested in attending the webinar should register here.

  • IPWatchdogIPWatchdog and Bardehle Pagenberg will be offering a webinar entitled "The State of Play at the UPC from a US-Perspective — Insights from a UPC Litigator" on January 17, 2024 at 12:00 pm (ET).  Gene Quinn of IPWatchdog, Inc. and Tobias Wuttke of Bardehle Pagenberg will discuss Unified Patent Court (UPC) developments from a U.S. perspective and how U.S. companies should adjust their enforcement and defense strategies in light of the emerging legal framework, and also cover how UPC litigation may complement U.S. patent enforcement as well as U.S. patent defense strategies.  The webinar will address the following topics:

    • Insights on how the UPC is operating, what the UPC time schedules and case management look like, and how internal workflows should be optimized
    • Clarity on the most relevant case law handed down by the UPC
    • Ways to improve defensive and offensive patent strategies involving this new forum
    • A better understanding of what the UPC really means from a U.S. perspective

    There is no registration fee for this webinar.  However, those interested in registering for the webinar, should do so here.

  • IPO #2The Intellectual Property Owners Association (IPO) will offer a one-hour webinar entitled "2023 Case Law Year in Review," on January 17, 2024 from 1:00 pm to 2:00 pm (ET).  Paul Berghoff of McDonnell Boehnen Hulbert & Berghoff LLP, Gregory Castanias of Jones Day, and Wendy Larson of Pirkey Barber will attempt to distill down the past year's major decisions from the Supreme Court, Federal Circuit, PTAB, and TTAB, and discuss the ones that will affect IP practitioners in 2024 and beyond.

    The registration fee for the webinar is $150 for non-members or free for IPO members (government and academic rates are available upon request).  Those interested in attending the webinar should register here.

  • Schwegman Lundberg WoessnerSchwegman Lundberg & Woessner will be offering a SLW Institute webinar entitled "Top 5 Changes in Chinese Patent Practice Based on the Amended Implementing Regulations of the Patent Law" on January 18, 2024 at 1:00 pm (CT).  Aaron Wininger of Schwegman Lundberg & Woessner will discuss the long-awaited amended Implementing Regulations of the Patent Law released by China's State Council in December 2023 that will take effect on January 20, 2024, and discuss the changes that have been made and how they will impact Chinese patent practice going forward.

    While there is no cost to participate in the program, those interested in attending the webinar can register here.

  • By Kevin E. Noonan –

    USPTO SealOn January 10th, the U.S. Patent and Trademark Office published a Notice in the Federal Register (89 Fed. Reg. 1563) regarding proposed Guidance on how the Office will apply the enablement requirement under 35 U.S.C. § 112(a) in light of the Supreme Court's decision last year in Amgen v. Sanofi.  In a nutshell, the Office announced that it will do so by continuing to use the rubrics established by the Federal Circuit in In re Wands.

    The Notice sets forth the Office's understanding of the Supreme Court's decision and its substantial adherence to existing law, particularly Wands.  But the Office is also cognizant (as the past 15-20 years has illustrated) that Supreme Court precedent is certainly (if not the only) the most relevant source of interpretation on how the patent statute should be understood and applied.  The Notice cites O'Reilly v. Morse, 56 U.S. 62 (1854); The Incandescent Lamp Patent, 159 U.S. 465 (1895); and Holland Furniture Co. v. Perkins Glue Co., 277 U.S. 245 (1928), in this regard.  The Office also recognizes more recent Federal Circuit precedent, including McRO, Inc. v. Bandai Namco Games Am. Inc., 959 F.3d 1091 (Fed. Cir. 2020); Wyeth & Cordis Corp. v. Abbott Laboratories, 720 F.3d 1380 (Fed. Cir. 2013); Enzo Life Sciences, Inc. v. Roche Molecular Systems, Inc., 928 F.3d 1340 (Fed. Cir. 2019); and Idenix Pharmaceuticals LLC v. Gilead Sciences Inc., 941 F.3d 1149 (Fed. Cir. 2019), and the Supreme Court's holding in Amgen, based on Wood v. Underhill, 46 U.S. 1 (1846), and Minerals Separation, Ltd. v. Hyde, 242 U.S. 261 (1916), that a "specification is not necessarily inadequate just because it leaves the skilled artisan to perform some measure of adaptation or testing."

    This is where the Wands factors come into play, in providing the framework for determining the "reasonableness of experimentation."  The Notice acknowledges that the Court did not expressly address or rely on the Wands factors but finds support for their continued analytical vitality in the Court's emphasis that "the specification may call for a reasonable amount of experimentation to make and use the full scope of the claimed invention," the Wands factors being probative thereof.  The Notice cites post-Amgen decisions, specifically Baxalta Inc. v. Genentech Inc., 2023 U.S. App. LEXIS 24863 (Fed. Cir. 2023); Medytox, Inc. v. Galderma S.A., 71 F.4th 990 (Fed. Cir. 2023); and In re Starrett, 2023 WL 3881360 (Fed. Cir. 2023) (non-precedential), for reference to or reliance upon Wands.  Returning to the Federal Circuit's decision in Amgen (affirmed by the Supreme Court), the Notice cites the determination in that decision that "the scope of the claims was far broader in functional diversity than the disclosed examples, that the invention was in an unpredictable field of science with respect to satisfying the full scope of the functional limitations, and that there was not adequate guidance in the specification," all of which considerations track with the Wands factors.  Similar assessments are provided for the Baxalta (district court litigation), Medytox (PTAB decision in a PGR proceeding, and Starrett (PTAB decision in an ex parte appeal) Federal Circuit decisions.

    The Notice and proposed Guidance falls within the statutory interpretive protocol wherein the Supreme Court provides broad interpretation of the limits the statute imposes on what is patentable, the Federal Circuit applies those standards to individual cases cabined by their particular facts, and the Office, as an administrative agency, applies both layers of precedential interpretation in examining patent applications for compliance with the statutory standards as enacted by Congress and interpreted by the courts.  The Notice particularly specifies that it will apply the Wands factors "to ascertain whether the experimentation required to enable the full scope of the claimed invention is reasonable" "regardless of technology" under M.P.E.P § 2164.04.

    The Notice contains contact information for Office personnel from whom additional information can be obtained: Mary C. Till, Senior Legal Advisor, Office of Patent Legal Administration, at Mary.Till@uspto.gov or 571–272–7755; or Andrea S. Grossman, Legal Advisor, Office of Patent Legal Administration, at Andrea.Grossman@uspto.gov or 571–270–3314.

  • By Kevin E. Noonan –

    Federal Circuit SealOne of the many changes introduced into U.S. patent law by the Leahy-Smith America Invents Act were provisions for post-grant review (PGR) and inter partes review (IPR).  There have been thousands of these proceedings instituted since their enactment into law, and the contours of how the Patent Trial and Appeal Board (PTAB) have executed these statutory provisions have been the subject of several Supreme Court decisions (see "Thryv, Inc. v. Click-to-Call Technologies, LP (2020)"; "Return Mail, Inc. v. United States Postal Service (2019)"; "Oil States Energy Services, LLC. v. Greene's Energy Group, LLC (2018)"; "SAS Institute Inc. v. Iancu (2018)"; "Cuozzo Speed Technologies LLC v. Lee (2016)").  Remarkably, however, there has never been a Federal Circuit decision addressing the status of either proceeding should the PTAB fail to satisfy the one-year limitation on the Board for issuing a Final Written Decision (FWD) (subject for good cause to a six-month extension), but that changed with the Court's decision in Purdue Pharma L.P. v. Collegium Pharmaceutical, Inc.

    The case arose in a post-grant review proceeding over Purdue's U.S. Patent No. 9,693,961, which is directed to opioid formulations modified to "prevent or deter" abuse (a tactic pursued by Purdue in part to expiate any responsibility that could be attributed to the company for the escalating opioid addiction crisis over the past decade or so; see, e.g., Keefe, Empire of Pain: The Secret History of the Sackler Dynasty).  The Patent Trial and Appeal Board in its Final Written Decision found all claims (1-17) invalid for lack of an adequate written description and anticipation.  Claim 1 is representative:

    A method of preparing an abuse deterrent controlled release dosage form comprising:
        combining oxycodone or a pharmaceutically acceptable salt thereof as active agent, polyglycolyzed glycerides, a C12 to C40 fatty acid or a mixture thereof, carnauba wax and beeswax, to form a homogenous mixture, wherein the oxycodone or pharmaceutically acceptable salt thereof is the sole active agent in the dosage form;
        preparing particles from the homogenous mixture; and containing the particles in a capsule;
        the abuse deterrent dosage form providing a therapeutic effect for about 12 hours or longer when orally administered to a human patient, and
        the abuse deterrent dosage form being abuse deterrent when subjected to tampering comprising heating at a temperature greater than about 45° C.

    The PGR was filed after Purdue filed suit against Collegium in District Court for infringement.

    Purdue argued before the PTAB that the '961 patent was not subject to PGR proceedings because it claimed priority to an earlier application having a filing date of August 6, 2001, but the Board rejected this challenge to its statutory authority when it held that the earlier-filed application did not support the priority claim for failure to satisfy the written description requirement of 35 U.S.C. § 112(a) and that the earliest effective filing date was after March 16, 2013 (making the patent subject to PGR scrutiny).  Both the PGR and district court litigation were stayed when Purdue filed for bankruptcy on September 24, 2019.  These stays were lifted by the bankruptcy court on September 1, 2020.  Even though the Chief Patent Judge had found good cause to extend by six months the statutory one-year deadline for the Board to render a Final Written Decision (until April 4, 2020), the Board did not render its FWD until November 19, 2021.

    Based on this timeline, Purdue moved the Board to terminate the PGR on the grounds that the Board's statutory authority had lapsed under 35 U.S.C. § 326(a)(11) and 37 C.F.R. § 42.200(c).  The Board rejected this motion and issued the FWD, finding all '961 claims invalid.  This appeal followed.

    The Federal Circuit affirmed the Board's FWD, in an opinion by Judge Dyk joined by Judges Hughes and Stoll.  The opinion notes that this is the first instance in which the Board has not issued a FWD by the statutory or extended deadlines, making this a case of first impression for the Court.  The opinion cites voluminous Supreme Court opinions, including United States v. James Daniel Good Real Prop., 510 U.S. 43, 63 (1993); Nielsen v. Preap, 139 S. Ct. 954, 967 (2019); Dolan v. United States, 560 U.S. 605, 611 (2010); Barnhart v. Peabody Coal Co., 537 U.S. 149, 159 (2003); Regions Hosp. v. Shalala, 522 U.S. 448, 459 n.3 (1998); and United States v. Montalvo-Murillo, 495 U.S. 711, 717 (1990), for the principle that "if a statute does not specify a consequence for non-compliance with statutory timing provisions, the federal courts will not in the ordinary course impose their own coercive sanction."  In particular, the Court cited the Federal Circuit's own precedent that "when a statute does not specify the consequences of non-compliance, courts should not assume that Congress intended that the agency lose its power to act," citing Hitachi Home Elecs. (Am.), Inc. v. United States, 661 F.3d 1343, 1347 (Fed. Cir. 2011) (quoting Liesegang v. Sec'y of Veterans Affs., 312 F.3d 1368, 1376– 77 (Fed. Cir. 2002)) and Transpacific Steel LLC v. United States, 4 F.4th 1306, 1320–21 (Fed. Cir. 2021).  Here the Court used this precedent and the absence of statutory direction supporting Purdue to affirm the PTAB's decision that its lack of timeliness was not sufficient basis to remove its power to issue even a tardy FWD.

    The opinion specifically addresses Purdue's arguments to the contrary, for example the express use of the term "shall" in the relevant timing statutes.  This argument is contrary to the Supreme Court's decision in Brock v. Pierce Cnty., 476 U.S. 253, 266 (1986), however which was sufficient to uphold the Board's invalidity arguments.  Similarly, the panel rejected Purdue's reliance on the use of "negative words" such as "not later than" and "by not more than" under other Supreme Court precedent (specifically, French v. Edwards, 80 U.S. 506 (1871)) because that case did not involve a statutory deadline and later Supreme Court cases did not support the principle.  Another unsuccessful argument advanced by Purdue was based on the purported express tying of the statutory time limitation with the Board's statutory authority under Section 6, the interpretation of which the Federal Circuit held could be upheld under Supreme Court precedent only when Congress had clearly stated that "procedural rules, including time bars, cabin a court's power," citing United States v. Wong, 575 U.S. 402, 409 (2015) (quoting Sebelius v. Auburn Reg'l Med. Ctr., 568 U.S. 145, 153 (2013)).  The panel also rejected Purdue's argument that limitations in the statute relating to "good cause" and "joinder" circumstances evinced the required Congressional intent, particularly in view of the Court's Barnhart decision, wherein "enunciation of two exceptions does not imply an exclusion of a third."  Finally, portions of the Leahy-Smith America Invents Act which do bar the Office from acting after a time period expires use "quite different language" including Section 315(b) (that an IPR "may not be instituted" after the 1-year time bar); and Section 321(c) (wherein a PGR petition "may only be filed" not later than 9 months after patent grant).  According to the panel, these instances established that "[h]ad Congress meant to deprive the agency of power in section 326(a)(11), it knew how to do it" and had not.

    Likewise the Federal Circuit did not find any support in the legislative history of the AIA to support Purdue's assertion that the Board lost its authority to issue a FWD after the statutory time period had expired.  The panel understood the purposes for the amendments to the statute to substitute PGRs and IPRs for inter partes reexamination was to make the post-grant review process more efficient, and stripping the PTAB of the capacity to render a FWD after undertaking the proceedings merely due to missing the statutory time proscriptions was not consistent with increasing efficiency of post-grant reviews.  And the Court further rejected Purdue's arguments that its decision would leave post-grant review proceedings just as open-ended as the inter partes reexaminations Congress intended that they replace; this is inaccurate according to the opinion because the Board "cannot ignore statutory deadlines," and the proper remedy under the circumstances faced by Purdue was mandamus, citing Norton v. Southern Utah Wilderness All., 542 U.S. 55, 65 (2004); Telecommunications Rsch. & Action Ctr. v. F.C.C., 750 F.2d 70, 76 (D.C. Cir. 1984); and Mylan Lab'ys Ltd. v. Janssen Pharmaceutica, N.V., 989 F.3d 1375, 1380–81 (Fed. Cir. 2021) (quoting Int'l Union, United Mine Workers of Am. v. U.S. Dep’t of Lab., 358 F.3d 40, 43 (D.C. Cir. 2004)).  Accordingly, the Court asserted that:

    Here, Purdue had an available mandamus remedy and simply chose not to seek to compel an earlier decision from the Board. Failure to seek relief by mandamus does not, however, mean a loss of the Board's authority to act.

    (Albeit merely in a footnote, the opinion asserts that the panel did not "reach the question of whether the bankruptcy automatic stay applies to PGRs" because "[t]his would require interpretation of the Bankruptcy Code" and the relevant provisions thereof seem not applicable to IPR or PGR proceedings.)

    Turning to the merits of the PTAB's FWD, the court upheld the Board's determination that the claims lacked adequate written description support.  Specifically the panel held that "the specification makes clear that the claims require 'inclusion of at least one aversive agent' and the parties agree that the claims require the use of an aversive agent," and provides "long lists" of such agents ("a bittering agent, an irritant, a gelling agent, or combinations thereof").  Applying the syllogism that "some surfactants can be gelling agents and that gelling agents can satisfy the aversive agent requirement, [but that] not all surfactants [such as the claimed polyglycolyzed glycerides] are gelling agents," the specification's written description failure was that it did not disclose which of the claimed polyglycolyzed glycerides are gelling agents.  Indeed, the opinion states that polyglycolyzed glycerides are described in the specification as surfactants, not gelling agents and that "surfactants can be used completely separate from and in addition to the gelling agent."  Thus, according to the opinion "[t]he disclosure of the application [both the '961 patent and the earlier-filed provisional application] does not reasonably convey to those skilled in the art that the inventor had possession of the claimed drug formula containing PGGs as a gelling agent (aversive agent)" as properly determined by the PTAB in invalidating all claims of the '961 patent.

    Purdue Pharma L.P. v. Collegium Pharmaceutical, Inc. (Fed. Cir. 2023)
    Panel: Circuit Judges Dyk, Hughes, and Stoll
    Opinion by Circuit Judge Dyk

  • By Kevin E. Noonan –

    Federal Circuit SealNot surprisingly, the Federal Circuit visited upon Plaintiff/Appellant PureCircle two of the Four Horsemen of the Biotech Patent Apocalypse* in a decision affirming the District Court's invalidation of the claims asserted against Defendant SweeGen in PureCircle USA Inc. v. SweeGen, Inc.

    To recap, PureCircle sued SweeGen for infringing U.S. Patent Nos. 9,243,273 (claims 1-14) and 10,485,257 (claims 1-7) over methods for making particular glucosylated forms of the natural sweetener steviol obtained from the Stevia rebaudiana plant.  The plant produces a variety of rebaudioside variants having various levels of glycosylation; the most predominant of these in the plant is termed "RebA" but this is not the most commercially valuable form.  That form, termed variably "RebX" and "RebM" contains six glucose residues on the steviol core, illustrated in the opinion by this diagram:

    Image
    Claim 1 of each of the asserted patents are relevant to the decision of both the District Court and the Federal Circuit:

    Claim 1 of the '257 patent:

    A method for adding at least one glucose unit to a steviol glycoside substrate to provide a target steviol glycoside, comprising contacting the steviol glycoside substrate with a recombinant biocatalyst protein enzyme comprising UDP-glucosyltransferase, wherein the target steviol glycoside is Rebaudioside X.

    Claim 1 of the '273 patent:

    A method for making Rebaudioside X comprising a step of converting Rebaudioside D to Rebaudioside X using a UDP-glucosyltransferase, wherein the conversion of Rebaudioside D to Rebaudioside X is at least about 50% complete.

    The District Court granted summary judgment against PureCircle, finding that claims 1-5 of the '257 patent and claims 1-11 and 14 of the '273 patent were invalid for reciting patent-ineligible subject matter under 35 U.S.C. § 101.  According to the Court, the claims were directed to the natural law of converting rebaudiosides, and specifically RebD, into RebM.  In the Court's view, "there is no dispute that the conversion of steviol glycosides and Reb D to Reb M using UGT enzymes is a natural process."  The Court found this characterization to be supported by disclosure in the specification, which was expressed as disclosing a "biocatalytic process," defined as "the use of natural catalysts, such as protein enzymes, to perform chemical transformations on organic compounds" (emphasis added).  The Court relied on Athena Diagnostics, Inc. v. Mayo Collaborative Services, LLC (Fed. Cir. 2019), for the proposition that "[s]ynthetically-created chemical compositions that are structurally and functionally identical to their naturally-occurring counterparts . . . are not patent eligible" and the admission in the specification that the recombinant enzymes were structurally and functionally "identical" to the naturally occurring enzymes.  The District Court rejected the distinction PureCircle attempted to draw for "method of preparation" claims analogous to CellzDirect and expressly with regard to any suggestion that such claims are per se patent eligible, as being inconsistent with precedent particularly the Supreme Court's rationale in Alice v CLS Bank (2014).

    The District Court also found that all asserted claims were invalid for failure to satisfy the written description requirement of 35 U.S.C. § 112(a), based on the parties' stipulation that the UGT enzyme recited for converting steviol glycosides and Reb D to Reb M was defined as "[a] type of enzyme that is capable of transferring a glucose unit from a uridine diphosphate glucose molecule to a steviol glycoside molecule."  From this, the Court held that the enzyme was functionally (as opposed to structurally) defined and thus invalid under Juno Therapeutics, Inc. v. Kite Pharma, Inc., 10 F.4th 1330, 1337 (Fed. Cir. 2021).  Pure Circle appealed.

    The Federal Circuit affirmed, in an opinion by Judge Dyk joined by Judges Schall and Stark.  The opinion first addressed the Section 112(a) grounds for invalidating all claims of the patents, reciting the requirement that, for a genus claim the required written description must disclose "either a representative number of species falling within the scope of the genus or structural features common to the members of the genus so that one of skill in the art can 'visualize or recognize' the members of the genus," the standard first set forth by Judge Lourie in Regents of the Univ. of California v. Eli Lilly & Co., 119 F.3d 1559, 1568–69 (Fed. Cir. 1997).  The panel agreed with the District Court's characterization of the '257 and '273 patent claims as being "genus claims using functional language."  SweeGen argued (echoing Sanofi's similar arguments for the enablement requirement in Amgen v. Sanofi) that the number of UGT enzymes based on the one expressly disclosed enzyme (UGT76G1) that would satisfy the functional definition was "at least one trillion" (using calculations recited in the panel's opinion), noting that there were 733 UGT enzymes known in 2012 from which various permutations of mutations could produce the cited astronomical number.  Accordingly, SweeGen argued, the common '257 and '273 patent specification did not disclose a representative number of species nor did they disclose any common structural feature(s).  Although PureCircle was able to argue that, rather than trillions of species there might be as many as 9,000 this argument was unpersuasive to both the District Court and the Federal Circuit; the Court opined that characterization of 9,000 species comprised "extensive trial and error testing" and the need thereof was contrary to finding that an adequate written description was provided in the specification, citing Novozymes A/S v. DuPont Nutrition Biosciences APS, 723 F.3d 1336, 1346 (Fed. Cir. 2013).  In addition, the Court was unconvinced by PureCircle's argument that the one disclosed UGT enzyme was sufficient to satisfy the written description requirement because it disclosed (purportedly inherently) the active site capable of catalyzing the conversion reaction(s).  The possibility that there may be other (unknown) enzymes capable of catalyzing the conversion reaction(s) and the absence of any express disclosure of the structure of UGT76G1 convinced the Federal Circuit that the situation here was analogous to the broad disclosure of scFv molecules in Juno v. Kite and thus that the written description requirement based on structural features was not satisfied.  And the opinion notes that as in Ariad v. Eli Lilly & Co.:

    Such claims merely recite a description of the problem to be solved while claiming all solutions to it and . . . cover any compound later actually invented and determined to fall within the claim's functional boundaries—leaving it to the pharmaceutical industry to complete an unfinished invention.

    The opinion also cites more recent cases, including AbbVie Deutschland GmbH & Co., KG v. Janssen Biotech, Inc., 759 F.3d 1285, 1300 (Fed. Cir. 2014), and Idenix Pharms. LLC v. Gilead Scis. Inc., 941 F.3d 1149, 1164 (Fed. Cir. 2019), in support of this conclusion.

    The convergence of the District Court's invalidity determinations based on Sections 101 and 112(a) arose in the opinion with regard to claim 14 of the '273 patent, which is limited to the expressly disclosed UGT76G1 species of UGT enzyme.  The Federal Circuit opinion turns in this regard to the Section 101 analysis, affirming the District Court's finding of invalidity for claim 14.  As set forth in the opinion, the Court held that "[t]o the extent that claim 14 claims a 'method for making Rebaudioside X comprising a step of converting Rebaudioside D to Rebaudioside X using a UDPglucosyltransferase' it claims a natural phenomenon," thus satisfying the first step of the Mayo/Alice formula for finding Section 101 invalidity.  In response to PureCircle's argument that the patentable distinction in this claim is that when in purified form the enzyme can achieve conversion of at least 50% of RebD to RebM (which is not achieved in the natural state), the opinion asserts that "[t]he problem with PureCircle's argument is that the 50% completion is itself an abstract idea."  Citing SAP Am., Inc. v. InvestPic, LLC, 898 F.3d 1161, 1167 (Fed Cir. 2018), the Federal Circuit asserts that "claim 14 of the '273 patent 'd[id] not specify how to achieve a particular purity or conversion percentage; rather, [it] only recite[s] the resulting percentages,'" quoting the District Court's opinion.  This portion of the opinion illustrates nicely the rhetorical gymnastics that the entire edifice of subject matter eligibility jurisprudence has created; after all, taken at face value this analysis introduces a requirement that the mechanistic details of how a chemical reaction catalyzed by an enzyme be disclosed, rather than merely demonstrating that the enzyme in the presence of starting compounds can produce the desired product.  Not surprisingly in view of this heretofore unknown requirement, the opinion notes that "PureCircle made no step two Alice/Mayo arguments before us or the district court" and thus affirmed the District Court's finding of invalidity for claim 14.

    The history of the Federal Circuit's explication of the Supreme Court's subject matter eligibility opinions is replete with decisions and rationales that are not for the faint-hearted, wherein methods for producing truck axles, Am. Axle & Mfg., Inc. v. Neapco Holdings LLC, 967 F.3d 1285, 1292 (Fed. Cir. 2020); electric car chargers, ChargePoint v. SemaConnect; garage door openers, Chamberlain Group v. Techtronic Industries; and digital cameras, Yu v. Apple (Fed. Cir. 2021), were considered abstract.  In each case, the temptation to characterize the application of the tortured calculus of subject matter eligibility as having reached its nadir has been tempting, but the capacity for even greater flights of analytical fancy seems to have no limit.  Sadly (for innovation, competitiveness, and the U.S. patent system), we have come very far from the simple rubric that "anything under the sun made by man" as a rational workable, subject matter eligibility standard.

    PureCircle USA Inc. v. SweeGen, Inc. (Fed. Cir. 2024)
    Nonprecedential disposition
    Panel: Circuit Judges Dyk, Schall, and Stark
    Opinion by Circuit Judge Dyk

    * Those four being subject matter eligibility, written description, enablement, and obviousness-type double patenting.

  • By Kevin E. Noonan –

    FDAEarlier this year, the U.S. Food and Drug Administration announced approval of Amgen's Wezlana (ustekinumab-auub) as an interchangeable biosimilar to Janssen Biotech's Stelara (ustekinumab).  The drug was approved for multiple inflammatory disorders:

    Adult patients with:

    • moderate to severe plaque psoriasis who are candidates for phototherapy or systemic therapy;
    • active psoriatic arthritis;
    • moderately to severely active Crohn's disease; and
    • moderately to severely active ulcerative colitis.

    Pediatric patients 6 years of age and older with:

    • moderate to severe plaque psoriasis who are candidates for phototherapy or systemic therapy; and
    • active psoriatic arthritis.

    Wezlana shares with Stelara a risk of increased infection, and has as side effects "nasopharyngitis, upper respiratory tract infection, headache, fatigue, nausea, vomiting, injection site erythema, vulvovaginal candidiasis/mycotic infection, bronchitis, pruritus, urinary tract infection, sinusitis, abdominal pain, influenza, fever and diarrhea."  The biosmilar showed "no clinically meaningful differences from" Stelara and satisfied the requirements for interchangeable status under § 351(k)(2)(B) of the Public Health Service Act (codified in 42 U.S.C. § 262(k)(2)(B)).

    This approval brings to 45 the number of approved biosimilar products of which five are interchangeable.

    Table              * Approved as interchangeable biosimilar